Uses of Package
modele

Packages that use modele

alonefichiers	Classes to convert and save informations about aloneinterfaces package use ; some changes have been performed to optimize use of this package.
aloneinterfaces	Classes to control, transmit and visualize informations for the Java Swing interface ; useful for quick start of use application.
controller	Classes to control and transmit informations for the Java Servlet Pages mechanism.
modele	Model for objet representation and computing P-DCFold Algorithms.
tests	First part of tests : the simpliest classes of the model.
testsalone	Other part of tests : Some parts and classes of interface / use.
testsorigin	These tests according to original code of Stefan Engelen (2006) Tests are using JUnit 3.8.1
testssuite01	Second part of tests : tests about algorithms of P-DCFold.
testssuite02	"Third" part of tests : tests about algorithms of P-DCFold.

Classes in modele used by alonefichiers

ObjectListe
Generic

PalindromeListe
This class to provide easy-to-use Palindrome tables / Lists.

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.

Classes in modele used by aloneinterfaces

Palindrome
This class define object which are part of sequences found in auto reverse alignment and cearching structure with positive score.

PalindromeListe
This class to provide easy-to-use Palindrome tables / Lists.

PalindromeListeListe
For some results of differents structures, this class is used on high level of algorithms.

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.

Classes in modele used by controller

ObjectListe
Generic

PalindromeListe
This class to provide easy-to-use Palindrome tables / Lists.

PalindromeListeListe
For some results of differents structures, this class is used on high level of algorithms.

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.

Classes in modele used by modele

Algorithms
Deprecated. Implementation of STefan Engleen very specific with some tricks make results differents...

AlgorithmsStefan
This class to concentrate most part of algorithms and computing, as Stefan Eneglen implement them.

Alignement
This class to make alignments possible in searching Palindrome's and helix.

ArbreExec
To do like an ArbrePalindrome and NoeudPalindrome of Origin, tree of execution of algorithms.

Base
A class for codification and input memory sequences.

ConvertedAlignementListe
Deprecated. [test with and without it : September 4, 2008]

NoeudArbreExec
This class is useful for an following execution tree in structural search of Palindrome's and definite each node.

NoeudArbreExecListe
This class to provide easy-to-use NoeudArbreExec tables / Lists.

ObjectListe
Generic

OriginAlgorithmsStefan
This class to concentrate most part of algorithms and computing, as Stefan Eneglen implement them.

OtherAlgorithmsStefan
This class to concentrate most part of algorithms and computing, as Stefan Eneglen implement them.

Palindrome
This class define object which are part of sequences found in auto reverse alignment and cearching structure with positive score.

PalindromeCible
Deprecated. Transfered to Palindrome

PalindromeListe
This class to provide easy-to-use Palindrome tables / Lists.

PalindromeListeListe
For some results of differents structures, this class is used on high level of algorithms.

PalindromeTest
Deprecated. Transfered to Palindrome

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.

Classes in modele used by tests

Alignement
This class to make alignments possible in searching Palindrome's and helix.

Base
A class for codification and input memory sequences.

NoeudArbreExec
This class is useful for an following execution tree in structural search of Palindrome's and definite each node.

NoeudArbreExecListe
This class to provide easy-to-use NoeudArbreExec tables / Lists.

Palindrome
This class define object which are part of sequences found in auto reverse alignment and cearching structure with positive score.

PalindromeListe
This class to provide easy-to-use Palindrome tables / Lists.

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.

Classes in modele used by testsalone

PalindromeListe
This class to provide easy-to-use Palindrome tables / Lists.

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

Classes in modele used by testsorigin

ObjectListe
Generic

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.

Classes in modele used by testssuite01

Algorithms
Deprecated. Implementation of STefan Engleen very specific with some tricks make results differents...

PalindromeListe
This class to provide easy-to-use Palindrome tables / Lists.

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.

Classes in modele used by testssuite02

Sequence
This class to define a nucleic sequence / alignment in different outpout format.

SequenceListe
This class to provide easy-to-use Sequence tables / Lists.