origincomment
Class Base

java.lang.Object
  origincomment.Base

public class Base
extends java.lang.Object

This class is a definition of a base in an "aligned or not" sequence.

Author:

Stéfan Engelen (2006) for coding..., Gabriel Chandesris (2008) for comments and makeing the code readable.

See Also:

ADN1cible.ADN1cible(String, String), ADN1cible.calcul_Resultat(ADN1test[], int, boolean, boolean), ADN1cible.copier(), ADN1cible.recherche_Palindrome(ADN1cible, int, int, int, ADN1test[], int, int, boolean, int), ADN1cible.recherche_Pseudonoeud(Base[], ADN1test[], boolean, int, int)

Field Summary

private char	acgt Base.
private int	position Position.

Constructor Summary

Base(char base, int position)
Constructor with given base and position in the sequence.

Method Summary

void	change_base(char base) To set current base.
void	change_position(int pos) To set current position.
char	quelle_base() To get current base.
int	quelle_position() To get current position.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

acgt

private char acgt

Base.

position

private int position

Position.

Constructor Detail

Base

public Base(char base,
            int position)

Constructor with given base and position in the sequence.

Parameters:

base - (char)

position - (int)

Method Detail

quelle_base

public char quelle_base()

To get current base.

Returns:

(char)

quelle_position

public int quelle_position()

To get current position.

Returns:

(int)

change_base

public void change_base(char base)

To set current base.

Parameters:

base - (char)

change_position

public void change_position(int pos)

To set current position.

Parameters:

pos - (int)