tests
Class TestSequence

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          tests.TestSequence

All Implemented Interfaces:

junit.framework.Test

public class TestSequence
extends junit.framework.TestCase

Test class about modele.Sequence class.
Some methods of modele.Sequence are complex. Tests are in the same way. Here the trace of changes in some methods : tests are useful !
Some tests make some traces for visual attention for eye verification. Not useful (but for human understanding it's necessary...). ;-)
Lesser priority Getters and Setters are tested in end of this class. These ones are useful when comparison between cible and tests sequences in SSCA Algorithm with the outpout of these numbers (double are truncated some after dot / comma).

Author:

Gabriel Chandesris (2008)

Field Summary

private Sequence	basetest1
private Sequence	basetest2
private java.lang.String	nom
static int	SEQ_LENGTH
private java.lang.String	sequence

Constructor Summary

TestSequence()

Method Summary

protected void	setUp()
void	testConvertBasesToString1()
void	testConvertBasesToString2()
void	testConvertBasesToString3()
void	testConvertBasesToString4()
void	testConvertBasesToString5()
void	testConvertDecimaleFalse()
void	testConvertDecimaleTrue1()
void	testConvertDecimaleTrue2()
void	testConvertDecimaleTrue3()
void	testEqualsSequenceFalseDe()
void	testEqualsSequenceFalseUn()
void	testEqualsSequenceTrueDe1()
void	testEqualsSequenceTrueDe2()
void	testEqualsSequenceTrueUn1()
void	testEqualsSequenceTrueUn2()
void	testExternalSequence1()
void	testExternalSequence2()
void	testGetBase()
void	testGetBaseAtRandom()
void	testGetBaseAtUnder0()
void	testGetBaseAtUpperLength()
void	testGetBaseChar()
void	testGetBaseInAlea()
void	testGetBaseInAll()
void	testGetBasePos()
void	testGetCombiGUGCUn()
void	testGetEffetGCUn()
void	testGetEffetGUGCUn()
void	testGetEffetGUUn()
void	testGetHomologieUn()
void	testGetIndelsUn()
void	testGetIndeterminateUn()
void	testGetNombreDecimale()
void	testGetNomDe()
void	testGetNomUn()
void	testGetScoreUn()
void	testGetSequenceBaseDe()
void	testGetSequenceBaseToStringDe()
void	testGetSequenceBaseToStringUn()
void	testGetSequenceBaseUn()
void	testGetSequenceCharDe()
void	testGetSequenceCharToStringDe()
void	testGetSequenceCharToStringUn()
void	testGetSequenceCharUn()
void	testGetSequenceDe()
void	testGetSequenceUn()
void	testGetSubSequenceDe()
void	testGetSubSequenceUn()
void	testGetVariabiliteUn()
void	testInternalSequence1()
void	testInternalSequence2()
void	testLengthAlignDe()
void	testLengthAlignUn()
void	testLengthDe()
void	testLengthUn()
void	testLimitDecimaleFalse()
void	testLimitDecimaleTrue()
void	testRemoveSubSequenceDe()
void	testRemoveSubSequenceUn()
void	testSetCombiGUGCUn()
void	testSetEffetGCUn()
void	testSetEffetGUGCUn()
void	testSetEffetGUUn()
void	testSetHomologieUn()
void	testSetIndelsUn()
void	testSetIndeterminateUn()
void	testSetNombreDecimale()
void	testSetNomDe()
void	testSetNomUn()
void	testSetVariabiliteUn()

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

basetest1

private Sequence basetest1

basetest2

private Sequence basetest2

nom

private java.lang.String nom

sequence

private java.lang.String sequence

SEQ_LENGTH

public static final int SEQ_LENGTH

See Also:

Constant Field Values

Constructor Detail

TestSequence

public TestSequence()

Method Detail

setUp

protected void setUp()
              throws java.lang.Exception

Overrides:

setUp in class junit.framework.TestCase

Throws:

java.lang.Exception

testEqualsSequenceFalseUn

public void testEqualsSequenceFalseUn()

testEqualsSequenceFalseDe

public void testEqualsSequenceFalseDe()

testEqualsSequenceTrueUn1

public void testEqualsSequenceTrueUn1()

testEqualsSequenceTrueUn2

public void testEqualsSequenceTrueUn2()

testEqualsSequenceTrueDe1

public void testEqualsSequenceTrueDe1()

testEqualsSequenceTrueDe2

public void testEqualsSequenceTrueDe2()

testGetNomUn

public void testGetNomUn()

testGetNomDe

public void testGetNomDe()

testSetNomUn

public void testSetNomUn()

testSetNomDe

public void testSetNomDe()

testLengthUn

public void testLengthUn()

testLengthDe

public void testLengthDe()

testLengthAlignUn

public void testLengthAlignUn()

testLengthAlignDe

public void testLengthAlignDe()

testGetSequenceUn

public void testGetSequenceUn()

testGetSequenceDe

public void testGetSequenceDe()

testGetSequenceBaseUn

public void testGetSequenceBaseUn()

testGetSequenceBaseDe

public void testGetSequenceBaseDe()

testGetSequenceBaseToStringUn

public void testGetSequenceBaseToStringUn()

testGetSequenceBaseToStringDe

public void testGetSequenceBaseToStringDe()

testGetSequenceCharUn

public void testGetSequenceCharUn()

testGetSequenceCharDe

public void testGetSequenceCharDe()

testGetSequenceCharToStringUn

public void testGetSequenceCharToStringUn()

testGetSequenceCharToStringDe

public void testGetSequenceCharToStringDe()

testConvertBasesToString1

public void testConvertBasesToString1()

testConvertBasesToString2

public void testConvertBasesToString2()

testConvertBasesToString3

public void testConvertBasesToString3()

testConvertBasesToString4

public void testConvertBasesToString4()

testConvertBasesToString5

public void testConvertBasesToString5()

testGetSubSequenceUn

public void testGetSubSequenceUn()

testGetSubSequenceDe

public void testGetSubSequenceDe()

testGetBase

public void testGetBase()

testGetBaseInAlea

public void testGetBaseInAlea()

testGetBaseInAll

public void testGetBaseInAll()

testGetBaseAtRandom

public void testGetBaseAtRandom()

testGetBaseAtUnder0

public void testGetBaseAtUnder0()

testGetBaseAtUpperLength

public void testGetBaseAtUpperLength()

testGetBaseChar

public void testGetBaseChar()

testGetBasePos

public void testGetBasePos()

testRemoveSubSequenceUn

public void testRemoveSubSequenceUn()

testRemoveSubSequenceDe

public void testRemoveSubSequenceDe()

testInternalSequence1

public void testInternalSequence1()

testInternalSequence2

public void testInternalSequence2()

testExternalSequence1

public void testExternalSequence1()

testExternalSequence2

public void testExternalSequence2()

testGetVariabiliteUn

public void testGetVariabiliteUn()

testGetEffetGCUn

public void testGetEffetGCUn()

testGetEffetGUUn

public void testGetEffetGUUn()

testGetEffetGUGCUn

public void testGetEffetGUGCUn()

testGetCombiGUGCUn

public void testGetCombiGUGCUn()

testGetHomologieUn

public void testGetHomologieUn()

testGetIndelsUn

public void testGetIndelsUn()

testGetIndeterminateUn

public void testGetIndeterminateUn()

testSetVariabiliteUn

public void testSetVariabiliteUn()

testSetEffetGCUn

public void testSetEffetGCUn()

testSetEffetGUUn

public void testSetEffetGUUn()

testSetEffetGUGCUn

public void testSetEffetGUGCUn()

testSetCombiGUGCUn

public void testSetCombiGUGCUn()

testSetHomologieUn

public void testSetHomologieUn()

testSetIndelsUn

public void testSetIndelsUn()

testSetIndeterminateUn

public void testSetIndeterminateUn()

testGetScoreUn

public void testGetScoreUn()

testConvertDecimaleTrue1

public void testConvertDecimaleTrue1()

testConvertDecimaleTrue2

public void testConvertDecimaleTrue2()

testConvertDecimaleTrue3

public void testConvertDecimaleTrue3()

testConvertDecimaleFalse

public void testConvertDecimaleFalse()

testLimitDecimaleTrue

public void testLimitDecimaleTrue()

testLimitDecimaleFalse

public void testLimitDecimaleFalse()

testGetNombreDecimale

public void testGetNombreDecimale()

testSetNombreDecimale

public void testSetNombreDecimale()