testssuite02
Class Alignedalphad

java.lang.Object
  modele.ObjectListe
      modele.SequenceListe
          testssuite02.AlignedSequences
              testssuite02.Alignedalphad

public class Alignedalphad
extends AlignedSequences

Here is 21 sequences of alphad RNA, original selection made by Stefan Engelen in 2006 and before for tests.
Target sequence is ecoli.

Since:

August 2008

Author:

Gabriel Chandesris (2008)

See Also:

ecoli

Field Summary

static Sequence	aacti
static Sequence	bpaha
static Sequence	bspap
static Sequence	ecoli
static Sequence	hainf
static Sequence	hinfl
static Sequence	kpneu
static Sequence	paeru
static Sequence	pamal
static Sequence	pmult
static Sequence	pputi
static Sequence	psyri
static Sequence	satyh
static Sequence	shvio
static Sequence	spara
static Sequence	sputr
static Sequence	stymu
static Sequence	styph
static Sequence	vchol
static Sequence	yepes
static Sequence	ypesi

Fields inherited from class testssuite02.AlignedSequences

localinstance

Constructor Summary

private

Alignedalphad()

Method Summary

static AlignedSequences

getAlignedSequences()

Methods inherited from class testssuite02.AlignedSequences

conversionFrom, conversionFrom, convertFrom, convertFrom, getAlignment

Methods inherited from class modele.SequenceListe

addSequence, clone, combinationWithoutRepetition, combinatoire, computeAverageVariabilite, equals, factorielle, getListe, getMoyenneVariabilite, getSequence, getSequence, has, isIn, length, removeSequence, removeSequence, setListe, setSequence, sortByDecreasing, sortByIncreasing

Methods inherited from class modele.ObjectListe

addObjet, equals, getListeObjects, getObject, has, removeObject, removeObject, setListe, setObject

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ecoli

public static final Sequence ecoli

styph

public static final Sequence styph

spara

public static final Sequence spara

stymu

public static final Sequence stymu

kpneu

public static final Sequence kpneu

satyh

public static final Sequence satyh

yepes

public static final Sequence yepes

ypesi

public static final Sequence ypesi

pamal

public static final Sequence pamal

pmult

public static final Sequence pmult

aacti

public static final Sequence aacti

hainf

public static final Sequence hainf

hinfl

public static final Sequence hinfl

shvio

public static final Sequence shvio

sputr

public static final Sequence sputr

vchol

public static final Sequence vchol

psyri

public static final Sequence psyri

pputi

public static final Sequence pputi

paeru

public static final Sequence paeru

bspap

public static final Sequence bspap

bpaha

public static final Sequence bpaha

Constructor Detail

Alignedalphad

private Alignedalphad()

Method Detail

getAlignedSequences

public static AlignedSequences getAlignedSequences()