modele
Class PalindromeTest

java.lang.Object
  modele.Palindrome
      modele.PalindromeTest

Deprecated. Transfered to Palindrome

public class PalindromeTest
extends Palindrome

Extension of class Palindrome, useful for conversion of Stefan Engelen's implementation of algorithms.
Aim is to have an equivalent Palindrome "aligned" (??) : translation interface (Interface Design Pattern).

Since:

August, 29 2008

Author:

Gabriel Chandesris (2008)

Field Summary

private int	longueur1 Deprecated. Length of complementary reverse 5' repetition.
private int	longueur2 Deprecated. Length of complementary reverse 3' repetition.

Constructor Summary

PalindromeTest(int begin, int end, int length1, int length2)
Deprecated. Constructor with given begin, end and two lengths.

Method Summary

static PalindromeTest[]	choisir_meilleur(int nb, PalindromeTest[] tabpal) Deprecated. [unused] Calling method ADN1cible.verifier_Conservation(Palindrome1cible, Palindrome1test, double, double, int, ADN1test[]) is not maintained in OtherAlgorithmsStefan...
int	quelle_longueur1() Deprecated.
int	quelle_longueur2() Deprecated.
int	quelle_position_debut() Deprecated.
int	quelle_position_fin() Deprecated.

Methods inherited from class modele.Palindrome

change_position_debut, change_position_fin, changer_carac_max, changer_carac_min, changer_conservation, changer_indeci, changer_longueur_Reelle, changer_longueur, changer_nb_pal, changer_pourcentage_conservation, chevauchant, chevauchant, choisir_meilleur, computeNumbers, copie, countPlusPlus, equals, equivalence, est_Compatible, est_indeci, getCount, getLongMut, getNombreErreur, getNombreMutationDouble, getNombreMutationSimple, getPertinence, getPoid, getPositionDebut, getPositionFin, getScore, getSequence, getTaux, inclu_dans, isCompatible, isCompatibleWith, isScore, isSelected, isSelectedCible, isSelectedTest, length, nbErreursPlusPlus, nbMutDoublePlusPlus, nbMutSimplePlusPlus, nombre_sequence_conserve, quel_critere, quel_nb_pal, quel_pourcentage_conservation, quel_type_critere, quelle_carac_max, quelle_carac_min, quelle_longueur_reelle, rechercher_approx, rechercher, rssh, setCountZero, setLength, setLongMut, setNombreErreur, setNombreMutationDouble, setNombreMutationSimple, setPertinence, setPoid, setPositionDebut, setPositionFin, setScore, setSequence, setTaux

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

longueur1

private int longueur1

Deprecated.

Length of complementary reverse 5' repetition.

longueur2

private int longueur2

Deprecated.

Length of complementary reverse 3' repetition.

Constructor Detail

PalindromeTest

public PalindromeTest(int begin,
                      int end,
                      int length1,
                      int length2)

Deprecated.

Constructor with given begin, end and two lengths.

Parameters:

begin - (int) begin

end - (int) end

length1 - (int) length 1

length2 - (int) length 2

See Also:

OtherAlgorithmsStefan.recherche_Point_Ancrage(Sequence, int, int, int, double, Sequence[], int), ADN1cible.verifier_Conservation(Palindrome1cible, Palindrome1test, double, double, int, ADN1test[]), Interface5.setInterface(ADN1cible, ADN1test[], int, int, int, int, int), choisir_meilleur(int, PalindromeTest[])

Method Detail

quelle_longueur1

public int quelle_longueur1()

Deprecated.

Overrides:

quelle_longueur1 in class Palindrome

quelle_longueur2

public int quelle_longueur2()

Deprecated.

Overrides:

quelle_longueur2 in class Palindrome

quelle_position_debut

public int quelle_position_debut()

Deprecated.

Overrides:

quelle_position_debut in class Palindrome

quelle_position_fin

public int quelle_position_fin()

Deprecated.

Overrides:

quelle_position_fin in class Palindrome

choisir_meilleur

public static PalindromeTest[] choisir_meilleur(int nb,
                                                PalindromeTest[] tabpal)

Deprecated. [unused] Calling method ADN1cible.verifier_Conservation(Palindrome1cible, Palindrome1test, double, double, int, ADN1test[]) is not maintained in OtherAlgorithmsStefan...

"This method choose the best _nb_ test palindromes"

Parameters:

nb - (int) number of palindrome to choose

tabpal - (Palindromes1test[])

Returns:

(Palindrome1tets[])

See Also:

ADN1cible.verifier_Conservation(Palindrome1cible, Palindrome1test, double, double, int, ADN1test[])