Package modele

Model for objet representation and computing P-DCFold Algorithms.

See:
Description

Class Summary

Algorithms	Deprecated. Implementation of STefan Engleen very specific with some tricks make results differents...
AlgorithmsCT01	Deprecated. see also Algorithms
AlgorithmsCT02	Deprecated. Tested as not very good... see also Algorithms
AlgorithmsCT03	Deprecated. see also Algorithms
AlgorithmsStefan	This class to concentrate most part of algorithms and computing, as Stefan Eneglen implement them.
AlgoStefanConverter	Linked with class AlgorithmsStefan AlgorithmsStefan to avoid to be too long : some conversion procedures are here as sttatic statements.
Alignement	This class to make alignments possible in searching Palindrome's and helix.
ArbreExec	To do like an ArbrePalindrome and NoeudPalindrome of Origin, tree of execution of algorithms.
Base	A class for codification and input memory sequences.
ConvertedAlignementListe	Deprecated. [test with and without it : September 4, 2008]
ConvertedProfil	"A mutation profile is a 4*4 matrix" : in reality it is 4*7...
NoeudArbreExec	This class is useful for an following execution tree in structural search of Palindrome's and definite each node.
NoeudArbreExecListe	This class to provide easy-to-use NoeudArbreExec tables / Lists.
ObjectListe	Generic
OriginAlgorithmsStefan	This class to concentrate most part of algorithms and computing, as Stefan Eneglen implement them.
OriginAlgoStefanConverter	Linked with class OriginAlgorithmsStefan OriginAlgorithmsStefan to avoid to be too long : some conversion procedures are here as sttatic statements.
OtherAlgorithmsStefan	This class to concentrate most part of algorithms and computing, as Stefan Eneglen implement them.
OtherAlgoStefanConverter	Linked with class OtherAlgorithmsStefan OtherAlgorithmsStefan to avoid to be too long : some conversion procedures are here as sttatic statements.
Palindrome	This class define object which are part of sequences found in auto reverse alignment and cearching structure with positive score.
PalindromeCible	Deprecated. Transfered to Palindrome
PalindromeListe	This class to provide easy-to-use Palindrome tables / Lists.
PalindromeListeListe	For some results of differents structures, this class is used on high level of algorithms.
PalindromeTest	Deprecated. Transfered to Palindrome
Sequence	This class to define a nucleic sequence / alignment in different outpout format.
SequenceCible	Deprecated. Transfered to Sequence
SequenceListe	This class to provide easy-to-use Sequence tables / Lists.
SequenceTest	Deprecated. Transfered to Sequence

Package modele Description

Model for objet representation and computing P-DCFold Algorithms.
Some changes with aim to make the model simplier and easier to understand, working and use.

Since:

Stéfan Engelen (2006)

Author:

Gabriel Chandesris (2008)

See Also:

tests, testssuite01