Uses of Class
modele.Alignement

Packages that use Alignement

modele	Model for objet representation and computing P-DCFold Algorithms.
tests	First part of tests : the simpliest classes of the model.

Uses of Alignement in modele

Methods in modele with parameters of type Alignement

boolean	Alignement.equals(Alignement toCompare) To know if instance of the class and an other are the same.
static PalindromeListe	Algorithms.searchAnchorPoints(Alignement calcul, double Smin, SequenceListe alignement, int nbErreursMax, int longPalindMin, int longBoucleMin) Deprecated. Search procedure of structural palindromes with pairing matrix and new selection criteria.
static PalindromeListe	Algorithms.searchAnchorPoints(int debut, int fin, Alignement calcul, double Smin, SequenceListe alignement, int nbErreursMax, int longPalindMin, int longBoucleMin) Deprecated. M[i,j] too long...
static PalindromeListe	Algorithms.searchAnchorPoints(Sequence cible, Alignement calcul, double Lmin, SequenceListe alignement, int decalage, int nbErreursMax) Deprecated. Not the good prototype as algorithm is defined.

Uses of Alignement in tests

Fields in tests declared as Alignement

private Alignement	TestAlignement.basetest1
private Alignement	TestAlignement.basetest2