Uses of Class
modele.NoeudArbreExec

Packages that use NoeudArbreExec

modele	Model for objet representation and computing P-DCFold Algorithms.
tests	First part of tests : the simpliest classes of the model.

Uses of NoeudArbreExec in modele

Fields in modele declared as NoeudArbreExec

private NoeudArbreExec	ArbreExec.current
private NoeudArbreExec[]	NoeudArbreExecListe.liste The list of Palindrome's
private NoeudArbreExec	Algorithms.noeudCourant Deprecated. Current node of execution tree.
private NoeudArbreExec	NoeudArbreExec.pere Father of current node.

Methods in modele that return NoeudArbreExec

NoeudArbreExec	ArbreExec.getCurrentNode()
NoeudArbreExec	NoeudArbreExec.getFils(int i)
NoeudArbreExec[]	NoeudArbreExecListe.getListe()
NoeudArbreExec	NoeudArbreExecListe.getNoeudArbreExec(int i)
NoeudArbreExec	Algorithms.getNoeudCourant() Deprecated. Default node : result node (contain list of Palindrome's after exxecution).
NoeudArbreExec	NoeudArbreExec.getPere()

Methods in modele with parameters of type NoeudArbreExec

void	NoeudArbreExec.addFils(NoeudArbreExec newSon)
void	NoeudArbreExecListe.addNoeudArbreExec(NoeudArbreExec fils, NoeudArbreExec pere) To add a NoeudArbreExec at the end of the list.
boolean	NoeudArbreExec.equals(NoeudArbreExec toCompare)
boolean	NoeudArbreExecListe.has(NoeudArbreExec elt) To know if a NoeudArbreExec is in this list.
private static void	ArbreExec.les_feuilles(NoeudArbreExecListe feuilles, NoeudArbreExec n) Leaves of the given node are put in the NoeudArbreExecListe.
private static void	ArbreExec.recuperation(PalindromeListeListe resultat, Palindrome[] tabPal, NoeudArbreExec n) "Recuperation" This method to keep compatibility with algorithms' implementation of Stefan Engelen and its conversion.
void	NoeudArbreExecListe.removeNoeudArbreExec(NoeudArbreExec elt) To remove a specific NoeudArbreExec
static void	Algorithms.searchAllStructuralPalindromes(NoeudArbreExec Nd, Sequence cible, SequenceListe alignement, int decalage, int nbErreursMax) Deprecated. To search structural palindromes (helix) including pseudoknots.
static void	Algorithms.searchStructuralPalindrome(NoeudArbreExec Nd, Sequence cible, int tailleCible, SequenceListe alignement, int decalage, int nbErreursMax) Deprecated. Searching structural palindromes in a selected sequence (cible), with comparison in a whole alignment of tests sequences.
void	ArbreExec.setCurrentNode(NoeudArbreExec currentNode)
void	NoeudArbreExecListe.setListe(NoeudArbreExec[] liste)
void	NoeudArbreExecListe.setNoeudArbreExec(NoeudArbreExec elt, int i)
void	NoeudArbreExec.setPere(NoeudArbreExec pere)

Constructors in modele with parameters of type NoeudArbreExec

NoeudArbreExec(Palindrome[] palindromes, NoeudArbreExec father)
Constructor with a given table of Palindrome's and a father node.

NoeudArbreExec(PalindromeListe palindromes, NoeudArbreExec father)
Constructor with a given list of Palindrome's and a father node.

NoeudArbreExecListe(NoeudArbreExec[] liste)
Constructor with a pre-made table of NoeudArbreExec's.

Uses of NoeudArbreExec in tests

Fields in tests declared as NoeudArbreExec

private NoeudArbreExec	TestNoeudArbreExec.basetest1
private NoeudArbreExec	TestNoeudArbreExec.basetest2