tests
Class TestBase

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          tests.TestBase

All Implemented Interfaces:

junit.framework.Test

public class TestBase
extends junit.framework.TestCase

Test class about modele.Base Class.
Tests of Getters and Setters are the most simple.
To test the isBase method, it is done with char used in a normal case some other codes (R, Y...), gap and some counter-examples.
Tests of isBaseOrGap is tested same as isBase (which is included).
MatchBases(char,char) is tested with all correct combinations and some uncorrect combinations, the MatchBasesGap(char,char) is tested with combinations with are not delayed to MatchBases(char,char).
MatchBases(Base,Base) and MatchBasesOrGap(Base,Base) are not tested because they directly delay to their (char,char) versions and getters which have been already tested.

Author:

Gabriel Chandesris (2008)

See Also:

modele

Field Summary

private Base

basetest A local instance of Base.

Constructor Summary

TestBase()

Method Summary

protected void	setUp() At the beginning of the tests, to instanciate a Base Object (and test constructor).
void	testEqualsFalseDe()
void	testEqualsFalseTr()
void	testEqualsFalseUn()
void	testEqualsTrue()
void	testGetBase()
void	testGetPosition()
void	testIsBaseA()
void	testIsBaseC()
void	testIsBaseG()
void	testIsBaseGap()
void	testIsBaseN()
void	testIsBaseOrGapC()
void	testIsBaseOrGapG()
void	testIsBaseOrGapGap()
void	testIsBaseOrGapN()
void	testIsBaseOrGapQ()
void	testIsBaseOrGapR()
void	testIsBaseOrGapT()
void	testIsBaseOrGapY()
void	testIsBaseOrGapZ()
void	testIsBaseQ()
void	testIsBaseR()
void	testIsBaseT()
void	testIsBaseY()
void	testIsBaseZ()
void	testMatchBasesCharCharAC()
void	testMatchBasesCharCharAG()
void	testMatchBasesCharCharAGap()
void	testMatchBasesCharCharAT()
void	testMatchBasesCharCharAU()
void	testMatchBasesCharCharCA()
void	testMatchBasesCharCharCG()
void	testMatchBasesCharCharCGap()
void	testMatchBasesCharCharCT()
void	testMatchBasesCharCharGA()
void	testMatchBasesCharCharGapA()
void	testMatchBasesCharCharGapC()
void	testMatchBasesCharCharGapG()
void	testMatchBasesCharCharGapGap()
void	testMatchBasesCharCharGapT()
void	testMatchBasesCharCharGC()
void	testMatchBasesCharCharGGap()
void	testMatchBasesCharCharGT()
void	testMatchBasesCharCharGU()
void	testMatchBasesCharCharTA()
void	testMatchBasesCharCharTC()
void	testMatchBasesCharCharTG()
void	testMatchBasesCharCharTGap()
void	testMatchBasesCharCharUA()
void	testMatchBasesCharCharUG()
void	testMatchBasesGapCharCharAGap()
void	testMatchBasesGapCharCharCGap()
void	testMatchBasesGapCharCharGapA()
void	testMatchBasesGapCharCharGapC()
void	testMatchBasesGapCharCharGapG()
void	testMatchBasesGapCharCharGapGap()
void	testMatchBasesGapCharCharGapT()
void	testMatchBasesGapCharCharGapU()
void	testMatchBasesGapCharCharGGap()
void	testMatchBasesGapCharCharTGap()
void	testMatchBasesGapCharCharUGap()
void	testScoreBasesAA()
void	testScoreBasesAG()
void	testScoreBasesAT()
void	testScoreBasesAU()
void	testScoreBasesCC()
void	testScoreBasesCG()
void	testScoreBasesGA()
void	testScoreBasesGC()
void	testScoreBasesGG()
void	testScoreBasesGT()
void	testScoreBasesGU()
void	testScoreBasesTA()
void	testScoreBasesTG()
void	testScoreBasesTT()
void	testScoreBasesUA()
void	testScoreBasesUG()
void	testScoreBasesUU()
void	testScoreBasesXX()
void	testSetBase()
void	testSetPosition()

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

basetest

private Base basetest

A local instance of Base.

Constructor Detail

TestBase

public TestBase()

Method Detail

setUp

protected void setUp()
              throws java.lang.Exception

At the beginning of the tests, to instanciate a Base Object (and test constructor).

Overrides:

setUp in class junit.framework.TestCase

Throws:

java.lang.Exception

testEqualsTrue

public void testEqualsTrue()

testEqualsFalseUn

public void testEqualsFalseUn()

testEqualsFalseDe

public void testEqualsFalseDe()

testEqualsFalseTr

public void testEqualsFalseTr()

testGetBase

public void testGetBase()

testGetPosition

public void testGetPosition()

testSetBase

public void testSetBase()

testSetPosition

public void testSetPosition()

testIsBaseA

public void testIsBaseA()

testIsBaseC

public void testIsBaseC()

testIsBaseG

public void testIsBaseG()

testIsBaseT

public void testIsBaseT()

testIsBaseGap

public void testIsBaseGap()

testIsBaseZ

public void testIsBaseZ()

testIsBaseQ

public void testIsBaseQ()

testIsBaseN

public void testIsBaseN()

testIsBaseR

public void testIsBaseR()

testIsBaseY

public void testIsBaseY()

testIsBaseOrGapC

public void testIsBaseOrGapC()

testIsBaseOrGapG

public void testIsBaseOrGapG()

testIsBaseOrGapT

public void testIsBaseOrGapT()

testIsBaseOrGapGap

public void testIsBaseOrGapGap()

testIsBaseOrGapZ

public void testIsBaseOrGapZ()

testIsBaseOrGapQ

public void testIsBaseOrGapQ()

testIsBaseOrGapN

public void testIsBaseOrGapN()

testIsBaseOrGapR

public void testIsBaseOrGapR()

testIsBaseOrGapY

public void testIsBaseOrGapY()

testMatchBasesCharCharAU

public void testMatchBasesCharCharAU()

testMatchBasesCharCharUA

public void testMatchBasesCharCharUA()

testMatchBasesCharCharGC

public void testMatchBasesCharCharGC()

testMatchBasesCharCharCG

public void testMatchBasesCharCharCG()

testMatchBasesCharCharAT

public void testMatchBasesCharCharAT()

testMatchBasesCharCharTA

public void testMatchBasesCharCharTA()

testMatchBasesCharCharGU

public void testMatchBasesCharCharGU()

testMatchBasesCharCharUG

public void testMatchBasesCharCharUG()

testMatchBasesCharCharAG

public void testMatchBasesCharCharAG()

testMatchBasesCharCharGA

public void testMatchBasesCharCharGA()

testMatchBasesCharCharAC

public void testMatchBasesCharCharAC()

testMatchBasesCharCharCA

public void testMatchBasesCharCharCA()

testMatchBasesCharCharCT

public void testMatchBasesCharCharCT()

testMatchBasesCharCharTC

public void testMatchBasesCharCharTC()

testMatchBasesCharCharGT

public void testMatchBasesCharCharGT()

testMatchBasesCharCharTG

public void testMatchBasesCharCharTG()

testMatchBasesCharCharGapGap

public void testMatchBasesCharCharGapGap()

testMatchBasesCharCharAGap

public void testMatchBasesCharCharAGap()

testMatchBasesCharCharCGap

public void testMatchBasesCharCharCGap()

testMatchBasesCharCharGGap

public void testMatchBasesCharCharGGap()

testMatchBasesCharCharTGap

public void testMatchBasesCharCharTGap()

testMatchBasesCharCharGapA

public void testMatchBasesCharCharGapA()

testMatchBasesCharCharGapC

public void testMatchBasesCharCharGapC()

testMatchBasesCharCharGapG

public void testMatchBasesCharCharGapG()

testMatchBasesCharCharGapT

public void testMatchBasesCharCharGapT()

testMatchBasesGapCharCharGapGap

public void testMatchBasesGapCharCharGapGap()

testMatchBasesGapCharCharAGap

public void testMatchBasesGapCharCharAGap()

testMatchBasesGapCharCharCGap

public void testMatchBasesGapCharCharCGap()

testMatchBasesGapCharCharGGap

public void testMatchBasesGapCharCharGGap()

testMatchBasesGapCharCharTGap

public void testMatchBasesGapCharCharTGap()

testMatchBasesGapCharCharUGap

public void testMatchBasesGapCharCharUGap()

testMatchBasesGapCharCharGapA

public void testMatchBasesGapCharCharGapA()

testMatchBasesGapCharCharGapC

public void testMatchBasesGapCharCharGapC()

testMatchBasesGapCharCharGapG

public void testMatchBasesGapCharCharGapG()

testMatchBasesGapCharCharGapT

public void testMatchBasesGapCharCharGapT()

testMatchBasesGapCharCharGapU

public void testMatchBasesGapCharCharGapU()

testScoreBasesGC

public void testScoreBasesGC()

testScoreBasesCG

public void testScoreBasesCG()

testScoreBasesAU

public void testScoreBasesAU()

testScoreBasesUA

public void testScoreBasesUA()

testScoreBasesAT

public void testScoreBasesAT()

testScoreBasesTA

public void testScoreBasesTA()

testScoreBasesGU

public void testScoreBasesGU()

testScoreBasesUG

public void testScoreBasesUG()

testScoreBasesXX

public void testScoreBasesXX()

testScoreBasesGG

public void testScoreBasesGG()

testScoreBasesGT

public void testScoreBasesGT()

testScoreBasesTG

public void testScoreBasesTG()

testScoreBasesGA

public void testScoreBasesGA()

testScoreBasesAG

public void testScoreBasesAG()

testScoreBasesCC

public void testScoreBasesCC()

testScoreBasesAA

public void testScoreBasesAA()

testScoreBasesUU

public void testScoreBasesUU()

testScoreBasesTT

public void testScoreBasesTT()