testsorigin
Class AlignedSequences

java.lang.Object
  modele.ObjectListe
      modele.SequenceListe
          testsorigin.AlignedSequences

Direct Known Subclasses:

Alignedalphad, Alignedtmrna, Alignedtrna

public class AlignedSequences
extends SequenceListe

This class to provide some records of sets of tests aligned sequences.
Singleton Design Pattern
DO NOT use directly this class!

Since:

August 2008

Author:

Gabriel Chandesris (2008)

Field Summary

protected static AlignedSequences

localinstance The local set of aligned sequences.

Constructor Summary

AlignedSequences()

Method Summary

static ADN1test[]	conversionFrom(SequenceListe liste) Conversion of a set of sequences listes to a tab of ADN1test's
static java.util.Vector	conversionFrom(SequenceListe[] listes) Conversion of a set of sequences listes to a vector of tabs of ADN1test's
static ADN1cible	convertFrom(Sequence cible) To get a "cible sequence" from an instance of Sequence.
static ADN1test	convertFrom(Sequence cible, int diff) To get a "test sequence" from an instance of Sequence.
static AlignedSequences	getAlignedSequences() To get the original set of aligned sequences.
static AlignedSequences	getAlignment()

Methods inherited from class modele.SequenceListe

addSequence, clone, combinationWithoutRepetition, combinatoire, computeAverageVariabilite, equals, factorielle, getListe, getMoyenneVariabilite, getSequence, getSequence, has, isIn, length, removeSequence, removeSequence, setListe, setSequence, sortByDecreasing, sortByIncreasing

Methods inherited from class modele.ObjectListe

addObjet, equals, getListeObjects, getObject, has, removeObject, removeObject, setListe, setObject

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

localinstance

protected static AlignedSequences localinstance

The local set of aligned sequences.

Constructor Detail

AlignedSequences

public AlignedSequences()

Method Detail

getAlignedSequences

public static AlignedSequences getAlignedSequences()

To get the original set of aligned sequences.

Returns:

(AlignedSequences)

getAlignment

public static AlignedSequences getAlignment()

conversionFrom

public static java.util.Vector conversionFrom(SequenceListe[] listes)

Conversion of a set of sequences listes to a vector of tabs of ADN1test's

Parameters:

listes - (SequenceListe[])

Returns:

(Vector) Vector of tabs of ADN1tests

See Also:

ADN1test, Sequence, SequenceListe, controller

conversionFrom

public static ADN1test[] conversionFrom(SequenceListe liste)

Conversion of a set of sequences listes to a tab of ADN1test's

Parameters:

liste - (SequenceListe)

Returns:

(ADN1test[]) Tab of ADN1tests

See Also:

ADN1test, Sequence, SequenceListe

convertFrom

public static ADN1cible convertFrom(Sequence cible)

To get a "cible sequence" from an instance of Sequence.

Parameters:

cible - (Sequence)

Returns:

(ADN1cible)

convertFrom

public static ADN1test convertFrom(Sequence cible,
                                   int diff)

To get a "test sequence" from an instance of Sequence.

Parameters:

cible - (Sequence)

diff - (int) [unused]

Returns:

(ADN1test)