Uses of Class
testsorigin.AlignedSequences

Packages that use AlignedSequences

testsorigin

These tests according to original code of Stefan Engelen (2006) Tests are using JUnit 3.8.1

Uses of AlignedSequences in testsorigin

Subclasses of AlignedSequences in testsorigin

class	Alignedalphad Here is 21 sequences of alphad RNA, original selection made by Stefan Engelen in 2006 and before for tests.
class	Alignedtmrna Here is a set of 87 sequences of tmRNA, original selection made by Stefan Engelen in 2006 and before for tests.
class	Alignedtrna Here is 9 sequences of tRNA, original selection made by Stefan Engelen in 2006 and before for tests.

Fields in testsorigin declared as AlignedSequences

protected static AlignedSequences

AlignedSequences.localinstance The local set of aligned sequences.

Methods in testsorigin that return AlignedSequences

static AlignedSequences	Alignedalphad.getAlignedSequences()
static AlignedSequences	Alignedtrna.getAlignedSequences()
static AlignedSequences	Alignedtmrna.getAlignedSequences()
static AlignedSequences	AlignedSequences.getAlignedSequences() To get the original set of aligned sequences.
static AlignedSequences	AlignedSequences.getAlignment()
static AlignedSequences	Alignedtmrna.getBestSequences()