testsorigin
Class TestPDCFold01

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          testsorigin.TestPDCFold01

All Implemented Interfaces:

junit.framework.Test

public class TestPDCFold01
extends junit.framework.TestCase

This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
Tests with sequences tmRNA {ecoli} and a selection of sequences {aqaeo,thmar,ththe,derad}, aim here is to test impact of parameters of much structural predictions
Conclusions are :

• one structure same to predict much with parameter 1...
• parameter int is taken over 2 and much predictions...

Since:

August 2008

Author:

Gabriel Chandesris (2008)

See Also:

ADN1cible

Field Summary

private java.util.Vector	tabsadn
private ADN1cible	target
private ADN1test[]	tests

Constructor Summary

TestPDCFold01()

Method Summary

protected void	setUp()
void	testPDCFoldMore01()
void	testPDCFoldMore02()
void	testPDCFoldMore03()
void	testPDCFoldMore0300()
void	testPDCFoldMore0301()
void	testPDCFoldMore0302()
void	testPDCFoldMore0303()
void	testPDCFoldMore0304()
void	testPDCFoldMore0305()
void	testPDCFoldMore0306()
void	testPDCFoldMore0307()
void	testPDCFoldMore0308()
void	testPDCFoldMore0309()
void	testPDCFoldMore0310()
void	testPDCFoldMore0311()
void	testPDCFoldMore0312()
void	testPDCFoldMore04()
void	testPDCFoldMore05()

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

target

private ADN1cible target

tests

private ADN1test[] tests

tabsadn

private java.util.Vector tabsadn

Constructor Detail

TestPDCFold01

public TestPDCFold01()

Method Detail

setUp

protected void setUp()
              throws java.lang.Exception

Overrides:

setUp in class junit.framework.TestCase

Throws:

java.lang.Exception

testPDCFoldMore01

public void testPDCFoldMore01()

testPDCFoldMore02

public void testPDCFoldMore02()

testPDCFoldMore0300

public void testPDCFoldMore0300()

testPDCFoldMore0301

public void testPDCFoldMore0301()

testPDCFoldMore0302

public void testPDCFoldMore0302()

testPDCFoldMore0303

public void testPDCFoldMore0303()

testPDCFoldMore0304

public void testPDCFoldMore0304()

testPDCFoldMore0305

public void testPDCFoldMore0305()

testPDCFoldMore0306

public void testPDCFoldMore0306()

testPDCFoldMore0307

public void testPDCFoldMore0307()

testPDCFoldMore0308

public void testPDCFoldMore0308()

testPDCFoldMore0309

public void testPDCFoldMore0309()

testPDCFoldMore0310

public void testPDCFoldMore0310()

testPDCFoldMore0311

public void testPDCFoldMore0311()

testPDCFoldMore0312

public void testPDCFoldMore0312()

testPDCFoldMore03

public void testPDCFoldMore03()

testPDCFoldMore04

public void testPDCFoldMore04()

testPDCFoldMore05

public void testPDCFoldMore05()