testsorigin
Class TestPDCFold02

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          testsorigin.TestPDCFold02

All Implemented Interfaces:

junit.framework.Test

public class TestPDCFold02
extends junit.framework.TestCase

This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
Tests with sequences tmRNA {ecoli} and the 4 first best sequences {haduc,hainf,acact,vicho} :
Variations of parameters for predictions, also order of sequences putted in tab in procedure to test.
01 to 10 : some tests in the same arrangement {ecoli,haduc,hainf,acact,vicho}
11 to 20 : same tests in reversed : {ecoli,vicho,acact,hainf,haduc}

Since:

August 2008

Author:

Gabriel Chandesris (2008)

See Also:

ADN1cible

Field Summary

private java.util.Vector	tabsadn
private ADN1cible	target
private ADN1test[]	tests

Constructor Summary

TestPDCFold02()

Method Summary

protected void	setUp()
void	testPDCFoldMore01()
void	testPDCFoldMore02()
void	testPDCFoldMore03()
void	testPDCFoldMore04()
void	testPDCFoldMore05()
void	testPDCFoldMore06()
void	testPDCFoldMore07()
void	testPDCFoldMore08()
void	testPDCFoldMore09()
void	testPDCFoldMore10()
void	testPDCFoldMore11()
void	testPDCFoldMore12()
void	testPDCFoldMore13()
void	testPDCFoldMore14()
void	testPDCFoldMore15()
void	testPDCFoldMore16()
void	testPDCFoldMore17()
void	testPDCFoldMore18()
void	testPDCFoldMore19()
void	testPDCFoldMore20()

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

target

private ADN1cible target

tests

private ADN1test[] tests

tabsadn

private java.util.Vector tabsadn

Constructor Detail

TestPDCFold02

public TestPDCFold02()

Method Detail

setUp

protected void setUp()
              throws java.lang.Exception

Overrides:

setUp in class junit.framework.TestCase

Throws:

java.lang.Exception

testPDCFoldMore01

public void testPDCFoldMore01()

testPDCFoldMore02

public void testPDCFoldMore02()

testPDCFoldMore03

public void testPDCFoldMore03()

testPDCFoldMore04

public void testPDCFoldMore04()

testPDCFoldMore05

public void testPDCFoldMore05()

testPDCFoldMore06

public void testPDCFoldMore06()

testPDCFoldMore07

public void testPDCFoldMore07()

testPDCFoldMore08

public void testPDCFoldMore08()

testPDCFoldMore09

public void testPDCFoldMore09()

testPDCFoldMore10

public void testPDCFoldMore10()

testPDCFoldMore11

public void testPDCFoldMore11()

testPDCFoldMore12

public void testPDCFoldMore12()

testPDCFoldMore13

public void testPDCFoldMore13()

testPDCFoldMore14

public void testPDCFoldMore14()

testPDCFoldMore15

public void testPDCFoldMore15()

testPDCFoldMore16

public void testPDCFoldMore16()

testPDCFoldMore17

public void testPDCFoldMore17()

testPDCFoldMore18

public void testPDCFoldMore18()

testPDCFoldMore19

public void testPDCFoldMore19()

testPDCFoldMore20

public void testPDCFoldMore20()