TestGlobalPDCFold00

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testssuite02
Class TestGlobalPDCFold00

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          testssuite02.TestGlobalPDCFold00

All Implemented Interfaces:: junit.framework.Test

public class TestGlobalPDCFold00
extends junit.framework.TestCase
extends junit.framework.TestCase

This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
Tests with sequences tmRNA : 01 to 03 : tests with all sequences selected and changing variables
04 to 06 : tests with double selection of all sequences
10 to 12 : tests with six bests homologuous sequences (SSCA scores then selection)
13 to 15 : tests with two times the prediction of six best sequences...
20 to 25 (including the "Less") : tests to know and prouve that target sequence is needed is homologuous sequences to compute prediction...
Tests with sequences tRNA : 31 to 33 : similar to 01 to 03 34 to 36 : similar to 04 to 06

Since:: August,29 2008
Author:: Gabriel Chandesris (2008)
See Also:: ADN1cible

Field Summary
`private SequenceListe[]`	`tabsadn`
`private Sequence`	`target`
`private SequenceListe`	`tests`

Constructor Summary
`TestGlobalPDCFold00()`

Method Summary
`protected void`	`setUp()`
`void`	`testGlobalPDCFold01()`
`void`	`testGlobalPDCFold02()`
`void`	`testGlobalPDCFold03()`
`void`	`testGlobalPDCFold04()`
`void`	`testGlobalPDCFold05()`
`void`	`testGlobalPDCFold06()`
`void`	`testGlobalPDCFold10()`
`void`	`testGlobalPDCFold11()`
`void`	`testGlobalPDCFold12()`
`void`	`testGlobalPDCFold13()`
`void`	`testGlobalPDCFold14()`
`void`	`testGlobalPDCFold15()`
`void`	`testGlobalPDCFold20()`
`void`	`testGlobalPDCFold20Less()`
`void`	`testGlobalPDCFold21()`
`void`	`testGlobalPDCFold21Less()`
`void`	`testGlobalPDCFold22()`
`void`	`testGlobalPDCFold22Less()`
`void`	`testGlobalPDCFold23()`
`void`	`testGlobalPDCFold23Less()`
`void`	`testGlobalPDCFold24()`
`void`	`testGlobalPDCFold24Less()`
`void`	`testGlobalPDCFold25()`
`void`	`testGlobalPDCFold25Less()`
`void`	`testGlobalPDCFold31()`
`void`	`testGlobalPDCFold32()`
`void`	`testGlobalPDCFold33()`
`void`	`testGlobalPDCFold33Optimal()`
`void`	`testGlobalPDCFold34()`
`void`	`testGlobalPDCFold35()`
`void`	`testGlobalPDCFold36()`

Methods inherited from class junit.framework.TestCase
`countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString`

Methods inherited from class junit.framework.Assert
`assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail`

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Field Detail

target

private Sequence target

tests

private SequenceListe tests

tabsadn

private SequenceListe[] tabsadn

Constructor Detail