modele
Class AlgorithmsCT02

java.lang.Object
  modele.Algorithms
      modele.AlgorithmsCT02

Deprecated. Tested as not very good... see also Algorithms

public class AlgorithmsCT02
extends Algorithms

Implementation of compatibilityTreament from scratch...

Since:

July 2008

Author:

Gabriel Chandesris (2008)

See Also:

Algorithms.compatibilityTreatment(PalindromeListe), AlgorithmsCT01, AlgorithmsCT03

Field Summary

Fields inherited from class modele.Algorithms

Ms

Constructor Summary

AlgorithmsCT02(Sequence cible, SequenceListe alignement)
Deprecated. Do not instanciate this class.

Method Summary

static PalindromeListeListe	compatibilityTreatment(PalindromeListe L) Deprecated. Polymorphism of procedure.
static PalindromeListeListe	compatibilityTreatmentMore(PalindromeListe L) Deprecated.

Methods inherited from class modele.Algorithms

algoSSCA, checkConservation, checkConservationOldVersion, commonPrediction, defaultPredictionOfStructure, getAlignement, getCible, getDecalage, getDelcrit, getIdecrit, getIteration, getLongBoucleMin, getLongPalindMin, getMaxHomology, getMinHomology, getNbErreursMax, getNbMaxSequences, getNbMinSequences, getNoeudCourant, getResolution, iterationLessLess, iterationPlusPlus, launchExecution, newSequenceDeduction, searchAllStructuralPalindromes, searchAnchorPoints, searchAnchorPoints, searchAnchorPoints, searchStructuralPalindrome, setDecalage, setDelcrit, setIdecrit, SetIterationZero, setLongBoucleMin, setLongPalindMin, setMaxHomology, setMinHomology, setNbErreursMax, setNbMaxSequences, setNbMinSequences, setResolution, variableZonesTreatment

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AlgorithmsCT02

public AlgorithmsCT02(Sequence cible,
                      SequenceListe alignement)

Deprecated. Do not instanciate this class.

Default Constructor.

Parameters:

cible - (Sequence)

alignement - (SequenceListe)

Method Detail

compatibilityTreatment

public static PalindromeListeListe compatibilityTreatment(PalindromeListe L)

Deprecated.

Polymorphism of procedure.

Parameters:

L - (PalindromeListe)

Returns:

PalindromeListeListe

compatibilityTreatmentMore

public static PalindromeListeListe compatibilityTreatmentMore(PalindromeListe L)

Deprecated.