modele
Class AlgorithmsCT03

java.lang.Object
  modele.Algorithms
      modele.AlgorithmsCT03

Deprecated. see also Algorithms

public class AlgorithmsCT03
extends Algorithms

Understanding of what is doing compatibilityTreament...

Since:

July 2008

Author:

Gabriel Chandesris (2008)

Field Summary

private static int

iteration Deprecated.

Fields inherited from class modele.Algorithms

Ms

Constructor Summary

AlgorithmsCT03(Sequence cible, SequenceListe alignement)
Deprecated. Do not instanciate this class.

Method Summary

static PalindromeListeListe	compatibilityTreatment(PalindromeListe L) Deprecated. Polymorphism of procedure.
static PalindromeListeListe	compatibilityTreatment01(PalindromeListe L) Deprecated.
static PalindromeListeListe	compatibilityTreatment02(PalindromeListe L) Deprecated.

Methods inherited from class modele.Algorithms

algoSSCA, checkConservation, checkConservationOldVersion, commonPrediction, defaultPredictionOfStructure, getAlignement, getCible, getDecalage, getDelcrit, getIdecrit, getIteration, getLongBoucleMin, getLongPalindMin, getMaxHomology, getMinHomology, getNbErreursMax, getNbMaxSequences, getNbMinSequences, getNoeudCourant, getResolution, iterationLessLess, iterationPlusPlus, launchExecution, newSequenceDeduction, searchAllStructuralPalindromes, searchAnchorPoints, searchAnchorPoints, searchAnchorPoints, searchStructuralPalindrome, setDecalage, setDelcrit, setIdecrit, SetIterationZero, setLongBoucleMin, setLongPalindMin, setMaxHomology, setMinHomology, setNbErreursMax, setNbMaxSequences, setNbMinSequences, setResolution, variableZonesTreatment

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

iteration

private static int iteration

Deprecated.

Constructor Detail

AlgorithmsCT03

public AlgorithmsCT03(Sequence cible,
                      SequenceListe alignement)

Deprecated. Do not instanciate this class.

Default Constructor.

Parameters:

cible - (Sequence)

alignement - (SequenceListe)

Method Detail

compatibilityTreatment

public static PalindromeListeListe compatibilityTreatment(PalindromeListe L)

Deprecated.

Polymorphism of procedure.

Parameters:

L - (PalindromeListe)

Returns:

PalindromeListeListe

compatibilityTreatment01

public static PalindromeListeListe compatibilityTreatment01(PalindromeListe L)

Deprecated.

compatibilityTreatment02

public static PalindromeListeListe compatibilityTreatment02(PalindromeListe L)

Deprecated.