Uses of Class
origincomment.Alignement

Packages that use Alignement

modele	Model for objet representation and computing P-DCFold Algorithms.
origincomment	Model for objet representation and computing P-DCFold Algorithms ; original code made by Stefan Engelen in 2006 and use "as if" without any garanty...

Uses of Alignement in modele

Fields in modele declared as Alignement

private Alignement[]

ConvertedAlignementListe.liste Deprecated. The list of ConvertedAlignement

Methods in modele that return Alignement

Alignement	ConvertedAlignementListe.getConvertedAlignement(int i) Deprecated.
Alignement[]	ConvertedAlignementListe.getListe() Deprecated.

Methods in modele with parameters of type Alignement

void	ConvertedAlignementListe.addConvertedAlignement(Alignement elt) Deprecated. To add a ConvertedAlignement at the end of the list.
boolean	ConvertedAlignementListe.has(Alignement elt) Deprecated. To know if a ConvertedAlignement is in this list.
void	ConvertedAlignementListe.removeConvertedAlignement(Alignement elt) Deprecated. To remove a specific ConvertedAlignement.
void	ConvertedAlignementListe.setConvertedAlignement(Alignement elt, int i) Deprecated.
void	ConvertedAlignementListe.setListe(Alignement[] liste) Deprecated.

Constructors in modele with parameters of type Alignement

ConvertedAlignementListe(Alignement[] liste)
Deprecated. Constructor with a pre-made table of ConvertedAlignement.

Uses of Alignement in origincomment

Methods in origincomment that return Alignement

Alignement

Alignement.copie() To make a clone of the current instance of Alignment.

Methods in origincomment with parameters of type Alignement

private void

Matrice_ALN.recupere_alignement(Alignement align, int[] courant, int forcage) To gain the alignment ?