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See:
Description
| Class Summary | |
|---|---|
| ADN1 | The main class for sequences. |
| ADN1cible | "Tous les pseudonoeuds d'une sous sequence sont recherches" "All pseudoknots of a sequence are searched. |
| ADN1test | Class for tests sequence (homologuous), but already used for target (cible) sequence. |
| Alignement | This class for alignment... |
| Appariement | Class about pairwise and pair bases arrangement. |
| ArbrePalindrome | Palindrome tree of execution in algorithm. |
| Base | This class is a definition of a base in an "aligned or not" sequence. |
| Case | An element of the matrix of score ? |
| Matrice_ALN | Alignment matrix... |
| NoeudPalindrome | Palindromes nodes in a tree of algorithm execution. |
| Palindrome1 | Main class for palindromes |
| Palindrome1cible | This define palindromes of the target sequence (sometimes from test ?). |
| Palindrome1test | This define palindromes of test sequences ?? |
| Profil | "A mutation profile is a 4*4 matrix" : in reality it is 4*7... |
| Resultat | A class for results ? |
| StefanAlgorithms | This class only for documentation and informations about the code and algorithms implemented by Stefan Engelen from 2002 to 2006. |
| StefanErrors | Some errors got in some places of Stefan Engelen original code / implementation. |
| TestAln | |
Model for objet representation and computing P-DCFold Algorithms ;
original code made by Stefan Engelen in 2006 and use "as if" without any garanty...
With correct javadoc comments, and ready for "human reading"
modele
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