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| Packages that use origincomment | |
|---|---|
| aloneinterfaces | Classes to control, transmit and visualize informations for the Java Swing interface ; useful for quick start of use application. |
| controller | Classes to control and transmit informations for the Java Servlet Pages mechanism. |
| modele | Model for objet representation and computing P-DCFold Algorithms. |
| origincomment | Model for objet representation and computing P-DCFold Algorithms ; original code made by Stefan Engelen in 2006 and use "as if" without any garanty... |
| testsorigin | These tests according to original code of Stefan Engelen (2006) Tests are using JUnit 3.8.1 |
| Classes in origincomment used by aloneinterfaces | |
|---|---|
| ADN1cible
"Tous les pseudonoeuds d'une sous sequence sont recherches" "All pseudoknots of a sequence are searched. |
|
| ADN1test
Class for tests sequence (homologuous), but already used for target (cible) sequence. |
|
| Palindrome1cible
This define palindromes of the target sequence (sometimes from test ?). |
|
| Profil
"A mutation profile is a 4*4 matrix" : in reality it is 4*7... |
|
| Classes in origincomment used by controller | |
|---|---|
| ADN1cible
"Tous les pseudonoeuds d'une sous sequence sont recherches" "All pseudoknots of a sequence are searched. |
|
| ADN1test
Class for tests sequence (homologuous), but already used for target (cible) sequence. |
|
| Classes in origincomment used by modele | |
|---|---|
| ADN1cible
"Tous les pseudonoeuds d'une sous sequence sont recherches" "All pseudoknots of a sequence are searched. |
|
| ADN1test
Class for tests sequence (homologuous), but already used for target (cible) sequence. |
|
| Alignement
This class for alignment... |
|
| ArbrePalindrome
Palindrome tree of execution in algorithm. |
|
| Palindrome1cible
This define palindromes of the target sequence (sometimes from test ?). |
|
| Palindrome1test
This define palindromes of test sequences ?? |
|
| Classes in origincomment used by origincomment | |
|---|---|
| ADN1
The main class for sequences. |
|
| ADN1cible
"Tous les pseudonoeuds d'une sous sequence sont recherches" "All pseudoknots of a sequence are searched. |
|
| ADN1test
Class for tests sequence (homologuous), but already used for target (cible) sequence. |
|
| Alignement
This class for alignment... |
|
| Appariement
Class about pairwise and pair bases arrangement. |
|
| ArbrePalindrome
Palindrome tree of execution in algorithm. |
|
| Base
This class is a definition of a base in an "aligned or not" sequence. |
|
| Case
An element of the matrix of score ? |
|
| Matrice_ALN
Alignment matrix... |
|
| NoeudPalindrome
Palindromes nodes in a tree of algorithm execution. |
|
| Palindrome1
Main class for palindromes |
|
| Palindrome1cible
This define palindromes of the target sequence (sometimes from test ?). |
|
| Palindrome1test
This define palindromes of test sequences ?? |
|
| Profil
"A mutation profile is a 4*4 matrix" : in reality it is 4*7... |
|
| Resultat
A class for results ? |
|
| Classes in origincomment used by testsorigin | |
|---|---|
| ADN1cible
"Tous les pseudonoeuds d'une sous sequence sont recherches" "All pseudoknots of a sequence are searched. |
|
| ADN1test
Class for tests sequence (homologuous), but already used for target (cible) sequence. |
|
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