testssuite01
Class TestAlgorithmsPartII

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          testssuite01.TestAlgorithmsPartII

All Implemented Interfaces:

junit.framework.Test

public class TestAlgorithmsPartII
extends junit.framework.TestCase

Test class about modele.Algorithms class (part II).
For algorithms here, test should be done be real and valid results, and analysis of tests near those results (because heuristic). Might be with real sequences...
Complexity of input / output of algorithms indicate tests in "real use".
(checked 20080529)

Author:

Gabriel Chandesris (2008)

See Also:

TestAlgorithmsPartI, TestAlgorithmsPartIII, TestAlgorithmsPartIV

Field Summary

private Sequence	cible Randomly generated sequence.
private Sequence	ecoli E. coli tmRNA
private SequenceListe	ecolist List of ecoli
private SequenceListe	liste1 List of randomly generated sequences.
private SequenceListe	liste2 List of this.cible.

Constructor Summary

TestAlgorithmsPartII()

Method Summary

protected void	setUp()
void	testCheckConservationNotNull0()
void	testCheckConservationNotNull1()
void	testCheckConservationNotNullColi()
void	testCheckConservationNull0To42()
void	testCheckConservationSameResult()
void	testCheckConservationSameResultColi()
void	testCompatibilityTreatmentRelevanceIs0False() results have been waiting
void	testCompatibilityTreatmentRelevanceIs0True()
void	testCompatibilityTreatmentRelevanceIsNot0False()
void	testCompatibilityTreatmentRelevanceIsNot0True()
void	testNewSequenceDeductionClone()
void	testNewSequenceDeductionNotClone()
void	testSearchAnchorPointsRandom()
void	testSearchAnchorPointsRealECOLI()
void	testVariableZonesTreatmentRandom()
void	testVariableZonesTreatmentREALecoli()
static void	visualize(PalindromeListe palList)

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ecoli

private Sequence ecoli

E. coli tmRNA

cible

private Sequence cible

Randomly generated sequence.

liste1

private SequenceListe liste1

List of randomly generated sequences.

liste2

private SequenceListe liste2

List of this.cible.

ecolist

private SequenceListe ecolist

List of ecoli

Constructor Detail

TestAlgorithmsPartII

public TestAlgorithmsPartII()

Method Detail

setUp

protected void setUp()
              throws java.lang.Exception

Overrides:

setUp in class junit.framework.TestCase

Throws:

java.lang.Exception

visualize

public static void visualize(PalindromeListe palList)

testNewSequenceDeductionClone

public void testNewSequenceDeductionClone()

testNewSequenceDeductionNotClone

public void testNewSequenceDeductionNotClone()

testCheckConservationNull0To42

public void testCheckConservationNull0To42()

testCheckConservationNotNull0

public void testCheckConservationNotNull0()

testCheckConservationNotNull1

public void testCheckConservationNotNull1()

testCheckConservationNotNullColi

public void testCheckConservationNotNullColi()

testCheckConservationSameResult

public void testCheckConservationSameResult()

testCheckConservationSameResultColi

public void testCheckConservationSameResultColi()

testCompatibilityTreatmentRelevanceIs0False

public void testCompatibilityTreatmentRelevanceIs0False()

results have been waiting

testCompatibilityTreatmentRelevanceIs0True

public void testCompatibilityTreatmentRelevanceIs0True()

testCompatibilityTreatmentRelevanceIsNot0False

public void testCompatibilityTreatmentRelevanceIsNot0False()

testCompatibilityTreatmentRelevanceIsNot0True

public void testCompatibilityTreatmentRelevanceIsNot0True()

testSearchAnchorPointsRandom

public void testSearchAnchorPointsRandom()

testSearchAnchorPointsRealECOLI

public void testSearchAnchorPointsRealECOLI()

testVariableZonesTreatmentRandom

public void testVariableZonesTreatmentRandom()

testVariableZonesTreatmentREALecoli

public void testVariableZonesTreatmentREALecoli()