testssuite01
Class TestAlgorithmsPartIV

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          testssuite01.TestAlgorithmsPartIV

All Implemented Interfaces:

junit.framework.Test

public class TestAlgorithmsPartIV
extends junit.framework.TestCase

Test class about modele.Algorithms class (part III).
Continuation of Part II (separated beause should take a long time).
For algorithms here, test should be done be real and valid results, and analysis of tests near those results (because heuristic). Might be with real sequences...
Complexity of input / output of algorithms indicate tests in "real use".

Author:

Gabriel Chandesris (2008)

See Also:

TestAlgorithmsPartI, TestAlgorithmsPartII, TestAlgorithmsPartIII

Field Summary

private Sequence	actact Act. act. tmRNA
private Sequence	cible Randomly generated sequence.
private SequenceListe	ciblist List of cible
private Sequence	ecoli E. coli tmRNA
private SequenceListe	ecolist List of ecoli
private Sequence	haeinf Hae. inf. tmRNA
private Sequence	pasmul Pas. mul. tmRNA
private SequenceListe	teslist Test liste
private Sequence	vibchol Vib. cho. tmRNA

Constructor Summary

TestAlgorithmsPartIV()

Method Summary

protected void	setUp()
void	testCommonPredictionREALecoli()
void	testCommonPredictionREALecoliTeslist()
void	testDefaultPredictionOfStructureREALecoli()
void	testDefaultPredictionOfStructureREALecoliTeslist()
void	testLaunchExecutionREALecoli()
void	testLaunchExecutionREALecoliTeslist()
void	testSAPCompatibilityTreatmentREALecoliColi()
void	testSAPCompatibilityTreatmentREALecoliOpt()
void	testSearchAllStructuralPalindromesREALEcoli() expected some results
void	testSearchAllStructuralPalindromesREALEcoliTeslist()
void	testSearchStructuralPalindromeREALecoli() expected some results
void	testVZTCompatibilityTreatmentREALecoliColi()
void	testVZTCompatibilityTreatmentREALecoliOpt()

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ecoli

private Sequence ecoli

E. coli tmRNA

vibchol

private Sequence vibchol

Vib. cho. tmRNA

haeinf

private Sequence haeinf

Hae. inf. tmRNA

actact

private Sequence actact

Act. act. tmRNA

pasmul

private Sequence pasmul

Pas. mul. tmRNA

ecolist

private SequenceListe ecolist

List of ecoli

cible

private Sequence cible

Randomly generated sequence.

ciblist

private SequenceListe ciblist

List of cible

teslist

private SequenceListe teslist

Test liste

Constructor Detail

TestAlgorithmsPartIV

public TestAlgorithmsPartIV()

Method Detail

setUp

protected void setUp()
              throws java.lang.Exception

Overrides:

setUp in class junit.framework.TestCase

Throws:

java.lang.Exception

testLaunchExecutionREALecoli

public void testLaunchExecutionREALecoli()

testLaunchExecutionREALecoliTeslist

public void testLaunchExecutionREALecoliTeslist()

testCommonPredictionREALecoli

public void testCommonPredictionREALecoli()

testCommonPredictionREALecoliTeslist

public void testCommonPredictionREALecoliTeslist()

testDefaultPredictionOfStructureREALecoli

public void testDefaultPredictionOfStructureREALecoli()

testDefaultPredictionOfStructureREALecoliTeslist

public void testDefaultPredictionOfStructureREALecoliTeslist()

testSAPCompatibilityTreatmentREALecoliColi

public void testSAPCompatibilityTreatmentREALecoliColi()

testSAPCompatibilityTreatmentREALecoliOpt

public void testSAPCompatibilityTreatmentREALecoliOpt()

testVZTCompatibilityTreatmentREALecoliColi

public void testVZTCompatibilityTreatmentREALecoliColi()

testVZTCompatibilityTreatmentREALecoliOpt

public void testVZTCompatibilityTreatmentREALecoliOpt()

testSearchStructuralPalindromeREALecoli

public void testSearchStructuralPalindromeREALecoli()

expected some results

testSearchAllStructuralPalindromesREALEcoli

public void testSearchAllStructuralPalindromesREALEcoli()

expected some results

testSearchAllStructuralPalindromesREALEcoliTeslist

public void testSearchAllStructuralPalindromesREALEcoliTeslist()