TestAlgorithmsPartIII

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testssuite01
Class TestAlgorithmsPartIII

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          testssuite01.TestAlgorithmsPartIII

All Implemented Interfaces:: junit.framework.Test

public class TestAlgorithmsPartIII
extends junit.framework.TestCase
extends junit.framework.TestCase

Test class about modele.Algorithms class (part III).
Some more reslisttic use (only real sequences tests of tmRNA already selected by SSCA).
For algorithms here, test should be done be real and valid results, and analysis of tests near those results (because heuristic). Might be with real sequences...
Complexity of input / output of algorithms indicate tests in "real use".
Differences in use of computeNumber (errors) of Palindrome's :
j-- : 21 - 2 - 10 - 25 - 1 - 22 / 21 - 2 - 10 - 21 - 1 - 22
j++ : 20 - 8 - 14 - 21 - 1 - 18 / 20 - 8 - 14 - 21 - 1 - 18 **
j++ is maintained ; some changes afterwards in code : results changes... 678 instead of 692 pals

Author:: Gabriel Chandesris (2008)
See Also:: modele, TestAlgorithmsPartI, TestAlgorithmsPartII, TestAlgorithmsPartIV

Field Summary
`private Sequence`	`actact` Act. act. tmRNA
`private Sequence`	`aersal` Aer. sal. tmRNA
`private SequenceListe`	`aersalliste` lists of sequences
`private Sequence`	`ecoli` E. coli tmRNA
`private SequenceListe`	`ecoliliste` lists of sequences
`private SequenceListe`	`exampleliste` lists of sequences
`private Sequence`	`haeinf` Hae. inf. tmRNA
`private SequenceListe`	`haeinfliste` lists of sequences
`private Sequence`	`pasmul` Pas. mul. tmRNA
`private Sequence`	`sheput` She. put. tmRNA
`private SequenceListe`	`sheputliste` lists of sequences
`private SequenceListe`	`teslist` lists of sequences
`private Sequence`	`vibchol` Vib. cho. tmRNA
`private SequenceListe`	`vibcholliste` lists of sequences

Constructor Summary
`TestAlgorithmsPartIII()`

Method Summary
`protected void`	`setUp()`
`void`	`testSAPColiAersalThenCT()`
`void`	`testSAPColiColiThenCT()`
`void`	`testSAPColiExampleThenCT()`
`void`	`testSAPColiHaeinfThenCT()`
`void`	`testSAPColiSheputThenCT()`
`void`	`testSAPColiSingleAersalThenCT()`
`void`	`testSAPColiSingleColiThenCT()`
`void`	`testSAPColiSingleHaeinfThenCT()`
`void`	`testSAPColiSingleSheputThenCT()`
`void`	`testSAPColiSingleVibCholThenCT()`
`void`	`testSAPColiTeslistThenCT()`
`void`	`testSAPColiVibcholThenCT()`
`void`	`testSearchAnchorPointsColiAersal()`
`void`	`testSearchAnchorPointsColiColi()`
`void`	`testSearchAnchorPointsColiExample()`
`void`	`testSearchAnchorPointsColiHaeinf()`
`void`	`testSearchAnchorPointsColiSheput()`
`void`	`testSearchAnchorPointsColiTeslist()`
`void`	`testSearchAnchorPointsColiVibchol()`
`void`	`testSearchStructuralPalindromeColiAersal()`
`void`	`testSearchStructuralPalindromeColiColi()`
`void`	`testSearchStructuralPalindromeColiExample()`
`void`	`testSearchStructuralPalindromeColiHaeinf()`
`void`	`testSearchStructuralPalindromeColiSheput()`
`void`	`testSearchStructuralPalindromeColiTeslist()`
`void`	`testSearchStructuralPalindromeColiVibchol()`
`void`	`testVariableZonesTreatmentColiAersal()`
`void`	`testVariableZonesTreatmentColiColi()`
`void`	`testVariableZonesTreatmentColiExample()`
`void`	`testVariableZonesTreatmentColiHaeinf()`
`void`	`testVariableZonesTreatmentColiSheput()`
`void`	`testVariableZonesTreatmentColiTesList()`
`void`	`testVariableZonesTreatmentColiVibchol()`
`void`	`testVZTColiAersalThenCT()`
`void`	`testVZTColiColiThenCT()`
`void`	`testVZTColiExampleThenCT()`
`void`	`testVZTColiHaeinfThenCT()`
`void`	`testVZTColiSheputThenCT()`
`void`	`testVZTColiTeslistThenCT()`
`void`	`testVZTColiVibcholThenCT()`

Methods inherited from class junit.framework.TestCase
`countTestCases, createResult, getName, run, run, runBare, runTest, setName, tearDown, toString`

Methods inherited from class junit.framework.Assert
`assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail`

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Field Detail

ecoli

private Sequence ecoli

E. coli tmRNA

vibchol

private Sequence vibchol

Vib. cho. tmRNA

sheput

private Sequence sheput

She. put. tmRNA

aersal

private Sequence aersal

Aer. sal. tmRNA

haeinf

private Sequence haeinf

Hae. inf. tmRNA

actact

private Sequence actact

Act. act. tmRNA

pasmul

private Sequence pasmul

Pas. mul. tmRNA

ecoliliste

private SequenceListe ecoliliste

lists of sequences

vibcholliste

private SequenceListe vibcholliste

lists of sequences

sheputliste

private SequenceListe sheputliste

lists of sequences

aersalliste

private SequenceListe aersalliste

lists of sequences

haeinfliste

private SequenceListe haeinfliste

lists of sequences

exampleliste

private SequenceListe exampleliste

lists of sequences

teslist

private SequenceListe teslist

lists of sequences

Constructor Detail