Uses of Class
modele.PalindromeListeListe

Packages that use PalindromeListeListe

aloneinterfaces	Classes to control, transmit and visualize informations for the Java Swing interface ; useful for quick start of use application.
controller	Classes to control and transmit informations for the Java Servlet Pages mechanism.
modele	Model for objet representation and computing P-DCFold Algorithms.

Uses of PalindromeListeListe in aloneinterfaces

Fields in aloneinterfaces declared as PalindromeListeListe

private PalindromeListeListe	AloneProcessus_old.results
private PalindromeListeListe	AloneProcessus.results

Methods in aloneinterfaces with parameters of type PalindromeListeListe

void	Interface3.setInterface(Sequence cible, SequenceListe[] other, PalindromeListeListe results) To fix how works the interface.

Uses of PalindromeListeListe in controller

Methods in controller that return PalindromeListeListe

private static PalindromeListeListe

ProcessusOrigin.getRecordingStructures(ADN1cible adncible) To get the recording structure in a good conversion format.

Methods in controller with parameters of type PalindromeListeListe

void	ListeBean.setResults(Sequence cible, PalindromeListeListe results) This procedure to compute the RnaViz and Bracket file result.

Uses of PalindromeListeListe in modele

Fields in modele declared as PalindromeListeListe

private PalindromeListeListe

ArbreExec.structures Structures (default is instanciate as a new Vector).

Methods in modele that return PalindromeListeListe

static PalindromeListeListe	AlgorithmsCT01.compatibilityTreamentCT01(PalindromeListe L) Deprecated. Polymorphism of procedure.
static PalindromeListeListe	AlgorithmsCT02.compatibilityTreatment(PalindromeListe L) Deprecated. Polymorphism of procedure.
static PalindromeListeListe	AlgorithmsCT03.compatibilityTreatment(PalindromeListe L) Deprecated. Polymorphism of procedure.
static PalindromeListeListe	Algorithms.compatibilityTreatment(PalindromeListe L) Deprecated. Here is a procedure Launcher This procedure to treat compatibility of found palindromes on each recursivity step, see searchStructuralPalindrome for launch.
static PalindromeListeListe	AlgorithmsCT01.compatibilityTreatment01(PalindromeListe L) Deprecated. Other is used (changesDCFold to P-DCFold)
static PalindromeListeListe	AlgorithmsCT03.compatibilityTreatment01(PalindromeListe L) Deprecated.
static PalindromeListeListe	AlgorithmsCT01.compatibilityTreatment02(PalindromeListe L) Deprecated. results of tests are not very good...
static PalindromeListeListe	AlgorithmsCT03.compatibilityTreatment02(PalindromeListe L) Deprecated.
static PalindromeListeListe	AlgorithmsCT01.compatibilityTreatment03(PalindromeListe L) Deprecated. ...
static PalindromeListeListe	AlgorithmsCT01.compatibilityTreatment04(PalindromeListe L) Deprecated. July 2008
static PalindromeListeListe	AlgorithmsCT01.compatibilityTreatment05(PalindromeListe Lbis) Deprecated.
static PalindromeListeListe	AlgorithmsCT02.compatibilityTreatmentMore(PalindromeListe L) Deprecated.
PalindromeListeListe	NoeudArbreExec.getAllStructures() A simple recursive mehtod to get all structures computed by algorithms.
private PalindromeListeListe	OriginAlgorithmsStefan.getRecordingStructures(ADN1cible target) To get the recording structure in a good conversion format.
PalindromeListeListe	OriginAlgorithmsStefan.getRecordingStructures(Sequence target) To get the recording structure in a good conversion format.
PalindromeListeListe	OtherAlgorithmsStefan.getRecordingStructures(Sequence target) To get the recording structure in a good conversion format.
PalindromeListeListe	AlgorithmsStefan.getRecordingStructures(Sequence target) To get the recording structure in a good conversion format.
PalindromeListeListe	ArbreExec.getStructures()
PalindromeListeListe	OtherAlgorithmsStefan.getStructures() To get structures from algorithm tree.
PalindromeListeListe	AlgorithmsStefan.getStructures() To get structures from algorithm tree.
private PalindromeListeListe	ArbreExec.tous_les_palindromes() "All Palindromes" This method to keep compatibility with algorithms' implementation of Stefan Engelen and its conversion.
private static PalindromeListeListe	OtherAlgorithmsStefan.traitement_Incompatibilite(Palindrome[] tabPalCible, boolean plusieurs_resultats, double incertitude, int nb_prediction, int nb_prediction_max) "Following methods sorted by use order in ADN1 Class". (1) "This method is about incompatibility between palindromes of same sequence, sorting palindromes by relevance (single and double mutations) then removing every palindrome incompatible with previous more relevant.
private static PalindromeListeListe	AlgorithmsStefan.traitement_Incompatibilite(Palindrome[] tabPalCible, boolean plusieurs_resultats, double incertitude, int nb_prediction, int nb_prediction_max) "Following methods sorted by use order in ADN1 Class". (1) "This method is about incompatibility between palindromes of same sequence, sorting palindromes by relevance (single and double mutations) then removing every palindrome incompatible with previous more relevant.
static PalindromeListeListe	AlgorithmsCT01.traitementIncompatibilite(PalindromeListe tabPalCible, boolean plusieursResultats, double incertitude, int nbPrediction, int nbPredictionMax) Deprecated. CompatibilityTreament...

Methods in modele with parameters of type PalindromeListeListe

void	NoeudArbreExec.addExecutionNodes(PalindromeListeListe Em) This method to add new son's to current Node.
static void	AlgorithmsCT01.compatibilityTreatmentOrigin(PalindromeListe L, int posi, int posj, PalindromeListeListe E) Deprecated. July 2008
private static void	OtherAlgorithmsStefan.incompatibilite_plusieurs_choix(PalindromeListeListe listeTabPal, int pos_tab, int i, int j, double incertitude, boolean plusieurs_resultats, int nb_prediction_max) "Following methods sorted by use order in ADN1 Class". (2) Much choices to treat incompatibility.
private static void	AlgorithmsStefan.incompatibilite_plusieurs_choix(PalindromeListeListe listeTabPal, int pos_tab, int i, int j, double incertitude, boolean plusieurs_resultats, int nb_prediction_max) "Following methods sorted by use order in ADN1 Class". (2) Much choices to treat incompatibility.
static void	AlgorithmsCT01.incompatibilitePlusieursChoix(PalindromeListeListe listeTabPal, int posTab, int i, int j, double incertitude, boolean plusieursResultats, int nbPredictionMax) Deprecated. When more than one choice of palindromes are present.
private static void	ArbreExec.recuperation(PalindromeListeListe resultat, Palindrome[] tabPal, NoeudArbreExec n) "Recuperation" This method to keep compatibility with algorithms' implementation of Stefan Engelen and its conversion.
private void	OtherAlgorithmsStefan.resultat_commun(PalindromeListeListe vec) RESULT TREAMENT "This method compute a common result from vector of tab of palindromes" Here some inside code indications about conversion from Vector to PalindromeListe : Post-comments with "<=>" inside : left about Vector, right about <Object>Liste
private void	AlgorithmsStefan.resultat_commun(PalindromeListeListe vec) RESULT TREAMENT "This method compute a common result from vector of tab of palindromes" Here some inside code indications about conversion from Vector to PalindromeListe : Post-comments with "<=>" inside : left about Vector, right about <Object>Liste
void	ArbreExec.setStructures(PalindromeListeListe structures)