A B C D E F G H I J K L M N O P Q R S T U V W X Y

D

dacodac - Variable in class aloneinterfaces.Interface

Bouton OK.

datatype - Variable in class alonefichiers.Fichier

File type.

debut - Variable in class aloneinterfaces.Interface4

Palindrome values.

debut - Variable in class aloneinterfaces.Interface6

Input values memory of instance.

debut - Static variable in class origincomment.ADN1test

"For the count of time of optimal result."

dec - Variable in class aloneinterfaces.Interface1

decalage - Static variable in class modele.Algorithms

Deprecated. Maximum gap's [FR : décalage], when checking conservation of Palindrome's.

decalage - Variable in class modele.AlgorithmsStefan

"Global attribute with signification.

decalage - Variable in class modele.OriginAlgorithmsStefan

"Global attribute with signification.

decalage - Variable in class modele.OtherAlgorithmsStefan

"Global attribute with signification.

decalage - Variable in class origincomment.ADN1cible

"Global attribute with signification.

decalage - Variable in class origincomment.Resultat

Decalage.

decoupeString(String) - Static method in class aloneinterfaces.Interface3

This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class controller.ListeBean

This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class controller.Processus

Deprecated. This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class controller.Processus_old

Deprecated. This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class controller.ProcessusNew

This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class controller.ProcessusOrigin

This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class modele.AlgoStefanConverter

This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class modele.OriginAlgoStefanConverter

This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class modele.OtherAlgoStefanConverter

This method to cut a String by 80 characters length substring.

decoupeString(String) - Static method in class origincomment.ADN1cible

This method to cut a String by 80 characters length substring.

decoupeString_Web(String) - Static method in class modele.AlgoStefanConverter

This method to cut a String by 80 characters length substring.

decoupeString_Web(String) - Static method in class modele.OriginAlgoStefanConverter

This method to cut a String by 80 characters length substring.

decoupeString_Web(String) - Static method in class modele.OtherAlgoStefanConverter

This method to cut a String by 80 characters length substring.

decoupeString_Web(String) - Static method in class origincomment.ADN1cible

This method to cut a String by 80 characters length substring.

dedes - Static variable in class testsorigin.Alignedtmrna

dedes - Static variable in class testssuite02.Alignedtmrna

defaultPredictionOfStructure(Sequence, SequenceListe, int) - Static method in class modele.Algorithms

Deprecated. The default prediction of P-DCFold Software (Optimal Prediction).

deja_choisi - Variable in class origincomment.Case

Already choose.

delcrit - Static variable in class modele.Algorithms

Deprecated. Deletion criteria, originally D = 0.01 (percentage).

DELETION - Static variable in class origincomment.Case

Operation DELETION is 2.

deplacement() - Method in class aloneinterfaces.AloneProcessus

AloneProcessus moving control.

deplacement() - Method in class aloneinterfaces.AloneProcessus_old

AloneProcessus moving control.

derad - Static variable in class testsorigin.Alignedtmrna

derad - Static variable in class testssuite02.Alignedtmrna

derniereSeq - Variable in class aloneinterfaces.Interface2

Interface memory.

derniereSequence - Variable in class aloneinterfaces.Interface2

Last sequence text area visualization.

descendre(int) - Method in class modele.ArbreExec

To get down in the tree : change current node to a choosen son of current node.

descendre(int) - Method in class origincomment.ArbrePalindrome

To get down in the tree : change current node to a choosen son of current node.

desequilibre_mutation_simple() - Method in class origincomment.Alignement

To get number of mutation desequilibrium between 5' and 3'.

destination - Variable in class aloneinterfaces.AloneProcessus

destination - Variable in class aloneinterfaces.AloneProcessus_old

destroy() - Method in class alonecontroller.AloneApplet

Deprecated. When ressources are needed or browser closed (just after a stop()).

deuxieme_astuce_a_la_con(String) - Method in class origincomment.StefanErrors

devul - Static variable in class testsorigin.Alignedtmrna

devul - Static variable in class testssuite02.Alignedtmrna

dimMonImage - Variable in class aloneinterfaces.MonImage

dimUnitaire - Variable in class aloneinterfaces.MonLayout

Unit Dimension.

dinod - Static variable in class testsorigin.Alignedtmrna

dinod - Static variable in class testssuite02.Alignedtmrna

dir - Static variable in class alonefichiers.Fichier

File directory.

distance(Sequence, Sequence, Sequence[]) - Static method in class modele.AlgoStefanConverter

Deprecated. "old version" see also AlgoStefanConverter.distance(Sequence, Sequence, Sequence[], int, int)

distance(Sequence, Sequence, Sequence[], int, int) - Static method in class modele.AlgoStefanConverter

"procedure which give a score to the test sequence and sort them. "
First part of SSCA algorithm : scores !

distance(ADN1cible, ADN1test, ADN1test[]) - Static method in class modele.OriginAlgoStefanConverter

Deprecated. "old version" see also OriginAlgoStefanConverter.distance(ADN1cible, ADN1test, ADN1test[], int, int)

distance(ADN1cible, ADN1test, ADN1test[], int, int) - Static method in class modele.OriginAlgoStefanConverter

"procedure which give a score to the test sequence and sort them. "
First part of SSCA algorithm : scores !

distance(Sequence, Sequence, Sequence[]) - Static method in class modele.OtherAlgoStefanConverter

Deprecated. "old version" see also OtherAlgoStefanConverter.distance(Sequence, Sequence, Sequence[], int, int)

distance(Sequence, Sequence, Sequence[], int, int) - Static method in class modele.OtherAlgoStefanConverter

"procedure which give a score to the test sequence and sort them. "
First part of SSCA algorithm : scores !

distance(ADN1cible, ADN1test, ADN1test[]) - Static method in class origincomment.ADN1test

"procedure which give a score to the test sequence and sort them. "
First part of SSCA algorithm : scores !

distribution - Variable in class origincomment.Resultat

Distribution.

diviser_regner(Palindrome[], Sequence, Sequence[], int, int, int, int, boolean, int) - Method in class modele.AlgorithmsStefan

COMPATIBLE PALINDROME SEARCH
Divide and Conquer procedure...

diviser_regner(Palindrome1cible[], ADN1cible, ADN1test[], int, int, int, int, boolean, int) - Method in class modele.OriginAlgorithmsStefan

COMPATIBLE PALINDROME SEARCH
Divide and Conquer procedure...

diviser_regner(Palindrome[], Sequence, Sequence[], int, int, int, int, boolean, int) - Method in class modele.OtherAlgorithmsStefan

COMPATIBLE PALINDROME SEARCH
Divide and Conquer procedure...

diviser_regner(Palindrome1cible[], ADN1cible, ADN1test[], int, int, int, int, boolean, int) - Method in class origincomment.ADN1cible

COMPATIBLE PALINDROME SEARCH
Divide and Conquer procedure...

diviser_regner(Palindrome1cible[], ADN1cible, ADN1test[], int, int, int, int, boolean, int) - Method in class origincomment.StefanErrors

Instance of object is given in procedure of the same instance.

doGet(HttpServletRequest, HttpServletResponse) - Method in class controller.Processus

Deprecated. To prevent from reload pages of accession without any "normal use".

doGet(HttpServletRequest, HttpServletResponse) - Method in class controller.Processus_old

Deprecated. To prevent from reload pages of accession without any "normal use".

doGet(HttpServletRequest, HttpServletResponse) - Method in class controller.ProcessusNew

To prevent from reload pages of accession without any "normal use".

doGet(HttpServletRequest, HttpServletResponse) - Method in class controller.ProcessusOrigin

To prevent from reload pages of accession without any "normal use".

doPost(HttpServletRequest, HttpServletResponse) - Method in class controller.Processus

Deprecated. To obtain data from POST form.

doPost(HttpServletRequest, HttpServletResponse) - Method in class controller.Processus_old

Deprecated. To obtain data from POST form.

doPost(HttpServletRequest, HttpServletResponse) - Method in class controller.ProcessusNew

To obtain data from POST form.

doPost(HttpServletRequest, HttpServletResponse) - Method in class controller.ProcessusOrigin

To obtain data from POST form.