A B C D E F G H I J K L M N O P Q R S T U V W X Y

N

n - Variable in class controller.ListeBean

The optimal number of sequences in a prediction.

nb_alignements - Variable in class origincomment.Matrice_ALN

Number of alignments.

nb_alignements_trouves - Variable in class origincomment.Matrice_ALN

Number of alignments found.

nb_prediction_max - Variable in class modele.AlgorithmsStefan

"Global attribute with signification.

nb_prediction_max - Variable in class modele.OriginAlgorithmsStefan

"Global attribute with signification.

nb_prediction_max - Variable in class modele.OtherAlgorithmsStefan

"Global attribute with signification.

nb_prediction_max - Variable in class origincomment.ADN1cible

"Global attribute with signification.

nberreur - Variable in class origincomment.Palindrome1test

Number of errors.

nbErreursMax - Static variable in class modele.Algorithms

Deprecated. Maximum possible errors in searching palindromes.

nbErreursPlusPlus() - Method in class modele.Palindrome

nbMaxSequences - Static variable in class modele.Algorithms

Deprecated. Maximum number of sequences for selection in SSCA.

nbMinSequences - Static variable in class modele.Algorithms

Deprecated. Minimum number of sequences for selection in SSCA.

nbmutdouble - Variable in class origincomment.Palindrome1test

Number of double mutations (compensatory).

nbMutDoublePlusPlus() - Method in class modele.Palindrome

nbmutsimple - Variable in class origincomment.Palindrome1test

Number of single mutations.

nbMutSimplePlusPlus() - Method in class modele.Palindrome

nbPred - Variable in class aloneinterfaces.Interface1

negon - Static variable in class testsorigin.Alignedtmrna

negon - Static variable in class testssuite02.Alignedtmrna

nemea - Static variable in class testsorigin.Alignedtmrna

nemea - Static variable in class testssuite02.Alignedtmrna

nemeb - Static variable in class testsorigin.Alignedtmrna

nemeb - Static variable in class testssuite02.Alignedtmrna

newDiskFileItemFactory(ServletContext, File) - Static method in class controller.Processus

Deprecated. Use of FichierFasta

newSequenceDeduction(Sequence, PalindromeListe) - Static method in class modele.Algorithms

Deprecated. To get a new sequence without found palindromes in sequence.

nieur - Static variable in class testsorigin.Alignedtmrna

nieur - Static variable in class testssuite02.Alignedtmrna

NoeudArbreExec - Class in modele

This class is useful for an following execution tree in structural search of Palindrome's and definite each node.

NoeudArbreExec() - Constructor for class modele.NoeudArbreExec

Default constructor, a first node which has no father and contain an empty list of Palindrome's and has no descendants (empty list).

NoeudArbreExec(PalindromeListe) - Constructor for class modele.NoeudArbreExec

Constrcutor with a given list of Palindrome's.

NoeudArbreExec(Palindrome[]) - Constructor for class modele.NoeudArbreExec

Constrcutor with a given table of Palindrome's.

NoeudArbreExec(PalindromeListe, NoeudArbreExec) - Constructor for class modele.NoeudArbreExec

Constructor with a given list of Palindrome's and a father node.

NoeudArbreExec(Palindrome[], NoeudArbreExec) - Constructor for class modele.NoeudArbreExec

Constructor with a given table of Palindrome's and a father node.

NoeudArbreExecListe - Class in modele

This class to provide easy-to-use NoeudArbreExec tables / Lists.

NoeudArbreExecListe() - Constructor for class modele.NoeudArbreExecListe

Default constructor with a list of 0 elements.

NoeudArbreExecListe(NoeudArbreExec[]) - Constructor for class modele.NoeudArbreExecListe

Constructor with a pre-made table of NoeudArbreExec's.

noeudCourant - Variable in class modele.Algorithms

Deprecated. Current node of execution tree.

NoeudPalindrome - Class in origincomment

Palindromes nodes in a tree of algorithm execution.

NoeudPalindrome() - Constructor for class origincomment.NoeudPalindrome

Default constructor.

NoeudPalindrome(Palindrome1cible[]) - Constructor for class origincomment.NoeudPalindrome

Constructor with a given table of palindromes.

NoeudPalindrome(Palindrome1cible[], NoeudPalindrome) - Constructor for class origincomment.NoeudPalindrome

Constructor with given table of palindromes and a father node.

nom - Variable in class alonefichiers.Fichier

File name.

nom - Variable in class modele.Sequence

Name of the sequence

nom - Variable in class origincomment.ADN1

name of the sequence.

nom - Variable in class tests.TestSequence

nom - Variable in class tests.TestSequenceListe

nom_seq - Variable in class origincomment.Resultat

Names of sequences.

nombre_erreur() - Method in class origincomment.Palindrome1cible

nombre_match - Variable in class origincomment.Alignement

Macth number (default : 0).

nombre_meilleurs - Variable in class origincomment.Resultat

Number of the bests.

nombre_mutation_double() - Method in class origincomment.Palindrome1cible

nombre_mutation_simple() - Method in class origincomment.Palindrome1cible

nombre_mutation_simple_3prime() - Method in class origincomment.Alignement

Single mutations number on side 3'.

nombre_mutation_simple_5prime() - Method in class origincomment.Alignement

Single mutation number on side 5'.

nombre_palindromes - Variable in class modele.Palindrome

Cible : Number of represented palindromes.

nombre_palindromes - Variable in class modele.PalindromeCible

Deprecated. Number of represented palindromes.

nombre_palindromes - Variable in class origincomment.Palindrome1cible

"Public attribute"
Number of represented palindromes.

nombre_sequence_conserve() - Method in class modele.Palindrome

nombre_sequence_conserve() - Method in class modele.PalindromeCible

Deprecated.

nombre_sequence_conserve() - Method in class origincomment.Palindrome1cible

nombreDecimale - Static variable in class modele.Sequence

Numbers of maximum elements of a real number (double) after dot / comma.

nombreErreur - Variable in class modele.Palindrome

Nomber of errors.

nombreErreur - Variable in class origincomment.Palindrome1cible

"Public attribute"
Number of errors.

nombreMutationDouble - Variable in class modele.Palindrome

Nombres de Mutations Doubles (compensatoires).

nombreMutationDouble - Variable in class origincomment.Palindrome1cible

"Public attribute"
Number of double mutations.

nombreMutationSimple - Variable in class modele.Palindrome

Nombres de Mutations Simples (consistantes).

nombreMutationSimple - Variable in class origincomment.Palindrome1cible

"Public attribute"
Number of single mutations.

nombreSequence - Variable in class origincomment.StefanErrors

nombreSequences - Variable in class controller.ListeBean

Number of sequences (can be useful to control number of sequences in alignment).

nomfichier - Variable in class aloneinterfaces.Interface0

Interface memory.

nomFichierResultatOptimal - Variable in class aloneinterfaces.Interface2

Optimal result file name area of visualization.

nopum - Static variable in class testsorigin.Alignedtmrna

nopum - Static variable in class testssuite02.Alignedtmrna

nouveau() - Method in class aloneinterfaces.MonBureau

To activate virutal desktop and make it visible.

nouveau - Variable in class aloneinterfaces.MonMenu

numerosequence - Variable in class modele.ConvertedProfil

Sequence which will be compared to others.

numerosequence - Variable in class origincomment.Profil

Sequence which will be compared to others.

numerotationHelice(String, int[][]) - Static method in class alonefichiers.FichierRnaViz

This method to number sequence's helix.