A B C D E F G H I J K L M N O P Q R S T U V W X Y

L

l1 - Variable in class aloneinterfaces.Interface7

Nucleotid numbers text area visualization.

l1 - Variable in class aloneinterfaces.Interface9

File title comparison text area comparison.

l10 - Variable in class aloneinterfaces.Interface1

private JLabel l9 = new JLabel("Nombre de predictions");

l10_aide - Variable in class aloneinterfaces.Interface1

l11 - Variable in class aloneinterfaces.Interface1

l12 - Variable in class aloneinterfaces.Interface1

l13 - Variable in class aloneinterfaces.Interface1

l14 - Variable in class aloneinterfaces.Interface1

l15 - Variable in class aloneinterfaces.Interface1

la_structure(int) - Method in class origincomment.ADN1cible

To get a specific structure.

label_critere - Variable in class aloneinterfaces.Interface1

label_decalage - Variable in class aloneinterfaces.Interface1

label_incertitude - Variable in class aloneinterfaces.Interface1

label_lg - Variable in class aloneinterfaces.Interface1

label_lg_boucle - Variable in class aloneinterfaces.Interface1

label_lg_pal - Variable in class aloneinterfaces.Interface1

label_type_arn - Variable in class aloneinterfaces.Interface1

largeur - Variable in class aloneinterfaces.MonImage

launch(Sequence, SequenceListe[], boolean) - Method in class modele.AlgorithmsStefan

To launch the computing (target is automatically treated in the set).

launch(Sequence, SequenceListe[], boolean) - Method in class modele.OriginAlgorithmsStefan

To launch the computing (target is automatically treated in the set).

launch(Sequence, SequenceListe[], boolean) - Method in class modele.OtherAlgorithmsStefan

To launch the computing (target is automatically treated in the set).

launchExecution() - Method in class modele.Algorithms

Deprecated. To launch searchAllStructuralPalindromes after constructor.

lbmin - Static variable in class modele.Alignement

Minimal length of loop (global / static).

le_palindrome(int, int) - Method in class origincomment.ADN1cible

To get a specific palindrome in a specific structure.

length() - Method in class alonefichiers.BooleanListe

To get the length of the current list of Boolean's.

length() - Method in class alonefichiers.Fichier

length() - Method in class alonefichiers.FichierFasta

Length of the current liste of instance of FichierFasta.

length() - Method in class alonefichiers.IntegerListe

To get the length of the current list of Integer's.

length() - Method in class modele.ConvertedAlignementListe

Deprecated.

length() - Method in class modele.NoeudArbreExecListe

length() - Method in class modele.ObjectListe

To get the length of the current list of Object's

length() - Method in class modele.Palindrome

Length of the current instance of Palindrome.

length() - Method in class modele.PalindromeListe

length() - Method in class modele.PalindromeListeListe

length() - Method in class modele.Sequence

length() - Method in class modele.SequenceListe

lengthAlign - Variable in class modele.Sequence

Alignment length.

lengthAlign() - Method in class modele.Sequence

lepne - Static variable in class testsorigin.Alignedtmrna

lepne - Static variable in class testssuite02.Alignedtmrna

les_feuilles() - Method in class modele.ArbreExec

Leaves of the root node.

les_feuilles(NoeudArbreExecListe, NoeudArbreExec) - Static method in class modele.ArbreExec

Leaves of the given node are put in the NoeudArbreExecListe.

les_feuilles() - Method in class origincomment.ArbrePalindrome

Leaves of the root node.

les_feuilles(Vector, NoeudPalindrome) - Static method in class origincomment.ArbrePalindrome

Leaves of the given node are put in the Vector.

les_sequences_tests() - Method in class origincomment.ADN1cible

To get test sequences.

les_structures() - Method in class origincomment.ADN1cible

To get structures from algorithm tree.

leSeuil - Variable in class aloneinterfaces.Interface2

Threshold text area visualization.

limitDecimale(double) - Static method in class modele.Sequence

To convert a double to a specific length after dot / comma (default is 3) : returning double (could be useful).

liste - Variable in class alonefichiers.BooleanListe

The list of Boolean's.

liste - Variable in class alonefichiers.FichierBracket

Current list of palindromes of file.

liste - Variable in class alonefichiers.FichierConvert

Current list of palindromes of file.

liste - Variable in class alonefichiers.FichierFasta

liste - Variable in class alonefichiers.IntegerListe

The list of Integer's.

liste - Variable in class modele.ConvertedAlignementListe

Deprecated. The list of ConvertedAlignement

liste - Variable in class modele.NoeudArbreExecListe

The list of Palindrome's

liste - Variable in class modele.ObjectListe

The list of Object's.

liste - Variable in class modele.PalindromeListe

The list of Palindrome's

liste - Variable in class modele.PalindromeListeListe

The list of PalindromeListe's

liste - Variable in class modele.SequenceListe

The list of Sequence's.

liste - Variable in class testsalone.TestFichierBracket

liste - Variable in class testsalone.TestFichierRnaViz

liste1 - Variable in class testssuite01.TestAlgorithmsPartII

List of randomly generated sequences.

liste2 - Variable in class testssuite01.TestAlgorithmsPartII

List of this.cible.

ListeBean - Class in controller

This class to transmit informations to the Java Servlet Page.

ListeBean() - Constructor for class controller.ListeBean

listeCible - Variable in class aloneinterfaces.Interface1

Graphical list of possible choice of cible sequences.

listeTest - Variable in class aloneinterfaces.Interface1

Tab of graphical lists of homologuous sequences.

listModelCible - Variable in class aloneinterfaces.Interface1

listModelTest - Variable in class aloneinterfaces.Interface1

lmin - Variable in class aloneinterfaces.Interface4

Palindrome values.

lmin - Variable in class aloneinterfaces.Interface6

Input values memory of instance.

lmin - Static variable in class origincomment.Matrice_ALN

Lmin / minimal length.

Lmin - Static variable in class tests.TestPalindrome

load_File(BufferedReader) - Method in class origincomment.ADN1

To read the name of a sequence using a BufferedReader input (first line).

load_File(BufferedReader) - Method in class origincomment.ADN1cible

RESULT TREAMENT
"This method create an object from recorded data in a file"

load_File(BufferedReader) - Method in class origincomment.Palindrome1

To read the beginning and the end of a palindrome in a BufferedReader input (two lines).

load_File(BufferedReader) - Method in class origincomment.Palindrome1cible

"Following methods sorted by use order in ADN1 Class". (13)
"This method create an _object_ (palindrome tab) from data in a file

localinstance - Static variable in class testsorigin.AlignedSequences

The local set of aligned sequences.

localinstance - Static variable in class testssuite02.AlignedSequences

The local set of aligned sequences.

LONG_MUT - Static variable in class modele.AlgorithmsStefan

"Global attributes of work"
Mutation length is 2.

LONG_MUT - Static variable in class modele.OriginAlgorithmsStefan

"Global attributes of work"
Mutation length is 2.

LONG_MUT - Static variable in class modele.OtherAlgorithmsStefan

"Global attributes of work"
Mutation length is 2.

LONG_MUT - Static variable in class origincomment.ADN1cible

"Global attributes of work"
Mutation length is 2.

LONG_MUT - Static variable in class origincomment.Palindrome1cible

"Internal attributes"
Mutation length is 2.

longBoucleMin - Static variable in class modele.Algorithms

Deprecated. Minimal length of loop.

longMut - Variable in class modele.Palindrome

Second rate of selection.

longMut - Variable in class origincomment.Palindrome1cible

"Public attribute"
Mutation length (default is 0).

longMutation - Variable in class aloneinterfaces.Interface1

longPalindMin - Static variable in class modele.Algorithms

Deprecated. Minimal length of palindrome / helix.

longueur - Variable in class aloneinterfaces.Interface4

Palindrome values.

longueur - Variable in class aloneinterfaces.Interface8

longueur - Variable in class aloneinterfaces.MonImage

longueur - Variable in class modele.Palindrome

Palindrome length.

longueur - Variable in class modele.Sequence

Sequence length, without gap / indel count.

longueur - Variable in class origincomment.ADN1cible

"Global attribute with signification.

longueur - Variable in class origincomment.ADN1test

Length of the current sequence.

longueur - Variable in class origincomment.Palindrome1cible

"Public attribute"
"length of the palindrome in target sequence, which is maintained in test sequences"

longueur1 - Variable in class modele.Palindrome

Test : Length of complementary reverse 5' repetition.

longueur1 - Variable in class modele.PalindromeTest

Deprecated. Length of complementary reverse 5' repetition.

longueur1 - Variable in class origincomment.Palindrome1test

Length of complementary reverse 5' repetition.

longueur2 - Variable in class modele.Palindrome

Test : Length of complementary reverse 3' repetition.

longueur2 - Variable in class modele.PalindromeTest

Deprecated. Length of complementary reverse 3' repetition.

longueur2 - Variable in class origincomment.Palindrome1test

Length of complementary reverse 3' repetition.

longueurReelle - Variable in class origincomment.Palindrome1cible

"Public attribute"
"Length of palindrome in target sequence"

lpmin - Static variable in class modele.Alignement

Minimal length of Palindrome (global / static).