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tabInterface - Variable in class aloneinterfaces.AloneProcessus
tabInterface - Variable in class aloneinterfaces.AloneProcessus_old
tableauInitial - Variable in class modele.AlgorithmsStefan: "Global attribute with signification.
tableauInitial - Variable in class modele.OriginAlgorithmsStefan: "Global attribute with signification.
tableauInitial - Variable in class modele.OtherAlgorithmsStefan: "Global attribute with signification.
tableauInitial - Variable in class origincomment.ADN1cible: "Global attribute with signification.
tableauPalindrome - Variable in class modele.AlgorithmsStefan: "Global attribute with signification.
tableauPalindrome - Variable in class modele.OriginAlgorithmsStefan: "Global attribute with signification.
tableauPalindrome - Variable in class modele.OtherAlgorithmsStefan: "Global attribute with signification.
tableauPalindrome - Variable in class origincomment.ADN1cible: "Global attribute with signification.
tableauPalindrome - Variable in class origincomment.NoeudPalindrome: Table of palindromes (default is size one and [0] not defined).
tableauSequences - Variable in class modele.ConvertedProfil: Homologuous / test sequences ?
tabsadn - Variable in class testsorigin.TestPDCFold00
tabsadn - Variable in class testsorigin.TestPDCFold01
tabsadn - Variable in class testsorigin.TestPDCFold02
tabsadn - Variable in class testsorigin.TestPDCFold03
tabsadn - Variable in class testssuite02.TestGlobalPDCFold00
taille - Variable in class aloneinterfaces.MonLayout: Length.
taille3prime - Variable in class origincomment.Alignement: Length on 3' side.
taille3prime - Static variable in class origincomment.Matrice_ALN: Length on 3' side.
taille5prime - Variable in class origincomment.Alignement: Length on 5' side.
taille5prime - Static variable in class origincomment.Matrice_ALN: Length on 5' side.
taille_boucle_min - Variable in class modele.AlgorithmsStefan: "Global attribute with signification.
taille_boucle_min - Variable in class modele.OriginAlgorithmsStefan: "Global attribute with signification.
taille_boucle_min - Variable in class modele.OtherAlgorithmsStefan: "Global attribute with signification.
taille_boucle_min - Variable in class origincomment.ADN1cible: "Global attribute with signification.
taille_pal_min - Variable in class modele.AlgorithmsStefan: "Global attribute with signification.
taille_pal_min - Variable in class modele.OriginAlgorithmsStefan: "Global attribute with signification.
taille_pal_min - Variable in class modele.OtherAlgorithmsStefan: "Global attribute with signification.
taille_pal_min - Variable in class origincomment.ADN1cible: "Global attribute with signification.
tailleBoucle - Variable in class aloneinterfaces.Interface1
taillePal - Variable in class aloneinterfaces.Interface1
target - Variable in class modele.ConvertedProfil: Target sequence ?
target - Variable in class testsorigin.TestPDCFold00
target - Variable in class testsorigin.TestPDCFold01
target - Variable in class testsorigin.TestPDCFold02
target - Variable in class testsorigin.TestPDCFold03
target - Variable in class testssuite02.TestGlobalPDCFold00
taux - Variable in class modele.Palindrome: Rate of selection.
TAUX_MUT - Static variable in class modele.AlgorithmsStefan: "Global attributes of work"
Mutation rate is 1.
TAUX_MUT - Static variable in class modele.OriginAlgorithmsStefan: "Global attributes of work"
Mutation rate is 1.
TAUX_MUT - Static variable in class modele.OtherAlgorithmsStefan: "Global attributes of work"
Mutation rate is 1.
TAUX_MUT - Static variable in class origincomment.ADN1cible: "Global attributes of work"
Mutation rate is 1.
taux_mut - Variable in class origincomment.Appariement: Mutation rate.
TAUX_MUT - Static variable in class origincomment.Palindrome1cible: "Internal attributes"
Mutation rate is 1.
taux_mut - Variable in class origincomment.StefanErrors: Not a private element of instance...
tauxMut - Variable in class origincomment.Palindrome1cible: "Public attribute"
Mutation rate (default is 0).
tauxMutation - Variable in class aloneinterfaces.Interface1
temps - Variable in class aloneinterfaces.AloneProcessus
temps - Variable in class aloneinterfaces.AloneProcessus_old
termineProgressBar(Interface1) - Method in class aloneinterfaces.AloneProcessus: Stop Progression Bar.
termineProgressBar(Interface1) - Method in class aloneinterfaces.AloneProcessus_old: Stop Progression Bar.
teslist - Variable in class testssuite01.TestAlgorithmsPartIII: lists of sequences
teslist - Variable in class testssuite01.TestAlgorithmsPartIV: Test liste
testAddExecutionNodes() - Method in class tests.TestNoeudArbreExec
testAddNoeudArbreExec() - Method in class tests.TestNoeudArbreExecListe
testAddPalindrome() - Method in class tests.TestPalindromeListe
testAddSequence() - Method in class tests.TestSequenceListe
TestAlgorithmsPartI - Class in testssuite01: Test class about modele.Algorithms class (Part I).
TestAlgorithmsPartI() - Constructor for class testssuite01.TestAlgorithmsPartI
TestAlgorithmsPartII - Class in testssuite01: Test class about modele.Algorithms class (part II).
TestAlgorithmsPartII() - Constructor for class testssuite01.TestAlgorithmsPartII
TestAlgorithmsPartIII - Class in testssuite01: Test class about modele.Algorithms class (part III).
TestAlgorithmsPartIII() - Constructor for class testssuite01.TestAlgorithmsPartIII
TestAlgorithmsPartIV - Class in testssuite01: Test class about modele.Algorithms class (part III).
TestAlgorithmsPartIV() - Constructor for class testssuite01.TestAlgorithmsPartIV
testAlgoSSCADe() - Method in class testssuite01.TestAlgorithmsPartI
testAlgoSSCATr() - Method in class testssuite01.TestAlgorithmsPartI
testAlgoSSCAUn() - Method in class testssuite01.TestAlgorithmsPartI
TestAlignement - Class in tests: Test class about modele.Alignement class.
TestAlignement() - Constructor for class tests.TestAlignement
TestAln - Class in origincomment
TestAln() - Constructor for class origincomment.TestAln
TestBase - Class in tests: Test class about modele.Base Class.
TestBase() - Constructor for class tests.TestBase
testCheckConservationNotNull0() - Method in class testssuite01.TestAlgorithmsPartII
testCheckConservationNotNull1() - Method in class testssuite01.TestAlgorithmsPartII
testCheckConservationNotNullColi() - Method in class testssuite01.TestAlgorithmsPartII
testCheckConservationNull0To42() - Method in class testssuite01.TestAlgorithmsPartII
testCheckConservationSameResult() - Method in class testssuite01.TestAlgorithmsPartII
testCheckConservationSameResultColi() - Method in class testssuite01.TestAlgorithmsPartII
testCombinatoire00() - Method in class tests.TestSequenceListe
testCombinatoire01() - Method in class tests.TestSequenceListe
testCombinatoire02() - Method in class tests.TestSequenceListe
testCombinatoire03() - Method in class tests.TestSequenceListe
testCombinatoire04() - Method in class tests.TestSequenceListe
testCombinatoire05() - Method in class tests.TestSequenceListe
testCombinatoire06() - Method in class tests.TestSequenceListe
testCombinatoire07() - Method in class tests.TestSequenceListe
testCombinatoire08() - Method in class tests.TestSequenceListe
testCombinatoire09() - Method in class tests.TestSequenceListe
testCombinatoire10() - Method in class tests.TestSequenceListe
testCombinatoire11() - Method in class tests.TestSequenceListe
testCombinatoire12() - Method in class tests.TestSequenceListe
testCombinatoire13() - Method in class tests.TestSequenceListe
testCombinatoire14() - Method in class tests.TestSequenceListe
testCombinatoire15() - Method in class tests.TestSequenceListe
testCombinatoire16() - Method in class tests.TestSequenceListe
testCombinatoire17() - Method in class tests.TestSequenceListe
testCombinatoire18() - Method in class tests.TestSequenceListe
testCombinatoire19() - Method in class tests.TestSequenceListe
testCombinatoire20() - Method in class tests.TestSequenceListe
testCombinatoire21() - Method in class tests.TestSequenceListe
testCombinatoire22() - Method in class tests.TestSequenceListe
testCombinatoire23() - Method in class tests.TestSequenceListe
testCombinatoire24() - Method in class tests.TestSequenceListe
testCombinatoire25() - Method in class tests.TestSequenceListe
testCombinatoire26() - Method in class tests.TestSequenceListe
testCommonPredictionREALecoli() - Method in class testssuite01.TestAlgorithmsPartIV
testCommonPredictionREALecoliTeslist() - Method in class testssuite01.TestAlgorithmsPartIV
TestCompatibilityTreament01 - Class in testssuite01: Test class abour modele.Algorithms.compatibilityTreament's procedures
The second appears to be the best one (taken and convert from Stefan Engelen implementation).
TestCompatibilityTreament01() - Constructor for class testssuite01.TestCompatibilityTreament01
TestCompatibilityTreament01Bis - Class in testssuite01: Test class abour modele.Algorithms.compatibilityTreament's procedures
All procedures tested are inspired from (Stefan Engelen)'s implementation and adapted to new model.
TestCompatibilityTreament01Bis() - Constructor for class testssuite01.TestCompatibilityTreament01Bis
TestCompatibilityTreament02 - Class in testssuite01: Test class abour modele.Algorithms.compatibilityTreament's procedures
Some tests on an other implementation from scratch.
TestCompatibilityTreament02() - Constructor for class testssuite01.TestCompatibilityTreament02
TestCompatibilityTreament03 - Class in testssuite01: Test class abour modele.Algorithms.compatibilityTreament's procedures
Some tests on an other implementation from scratch.
TestCompatibilityTreament03() - Constructor for class testssuite01.TestCompatibilityTreament03
testCompatibilityTreatment01_01() - Method in class testssuite01.TestCompatibilityTreament01
testCompatibilityTreatment01_1() - Method in class testssuite01.TestCompatibilityTreament03
testCompatibilityTreatment01_2() - Method in class testssuite01.TestCompatibilityTreament03
testCompatibilityTreatment01_3() - Method in class testssuite01.TestCompatibilityTreament03
testCompatibilityTreatment02_01() - Method in class testssuite01.TestCompatibilityTreament01: results have been waiting
testCompatibilityTreatment02_02() - Method in class testssuite01.TestCompatibilityTreament01
testCompatibilityTreatment02_1() - Method in class testssuite01.TestCompatibilityTreament03
testCompatibilityTreatment02_2() - Method in class testssuite01.TestCompatibilityTreament03
testCompatibilityTreatment02_3() - Method in class testssuite01.TestCompatibilityTreament03
testCompatibilityTreatment03_01() - Method in class testssuite01.TestCompatibilityTreament01
testCompatibilityTreatment04_01() - Method in class testssuite01.TestCompatibilityTreament01: results have been waiting
testCompatibilityTreatment04_02() - Method in class testssuite01.TestCompatibilityTreament01
testCompatibilityTreatmentMore01() - Method in class testssuite01.MoreTestsCT
testCompatibilityTreatmentMore01() - Method in class testssuite01.TestCompatibilityTreament02
testCompatibilityTreatmentMore02() - Method in class testssuite01.MoreTestsCT
testCompatibilityTreatmentMore02() - Method in class testssuite01.TestCompatibilityTreament02
testCompatibilityTreatmentMore03() - Method in class testssuite01.MoreTestsCT
testCompatibilityTreatmentMore04() - Method in class testssuite01.MoreTestsCT
testCompatibilityTreatmentOrigin_01() - Method in class testssuite01.TestCompatibilityTreament01
testCompatibilityTreatmentOrigin_02() - Method in class testssuite01.TestCompatibilityTreament01
testCompatibilityTreatmentRelevanceIs0False() - Method in class testssuite01.TestAlgorithmsPartII: results have been waiting
testCompatibilityTreatmentRelevanceIs0True() - Method in class testssuite01.TestAlgorithmsPartII
testCompatibilityTreatmentRelevanceIsNot0False() - Method in class testssuite01.TestAlgorithmsPartII
testCompatibilityTreatmentRelevanceIsNot0True() - Method in class testssuite01.TestAlgorithmsPartII
testCompatibilityTreatmentStefan_01() - Method in class testssuite01.TestCompatibilityTreament01Bis
testCompatibilityTreatmentStefan_02() - Method in class testssuite01.TestCompatibilityTreament01Bis
testCompatibilityTreatmentStefan_03() - Method in class testssuite01.TestCompatibilityTreament01Bis
testCompatibilityTreatmentStefan_04() - Method in class testssuite01.TestCompatibilityTreament01Bis
testCompatibilityTreatmentStefan_05() - Method in class testssuite01.MoreTestsCT
testCompatibilityTreatmentStefan_05() - Method in class testssuite01.TestCompatibilityTreament01Bis
testCompatibilityTreatmentStefan_06() - Method in class testssuite01.MoreTestsCT
testCompatibilityTreatmentStefan_06() - Method in class testssuite01.TestCompatibilityTreament01Bis
testCompatibilityTreatmentStefan_06_other() - Method in class testssuite01.MoreTestsCT
testComputeNumbersDe() - Method in class tests.TestPalindrome
testComputeNumbersDeUn() - Method in class tests.TestPalindrome
testComputeNumbersUn() - Method in class tests.TestPalindrome
testComputeNumbersUnDe() - Method in class tests.TestPalindrome
testConvertBasesToString1() - Method in class tests.TestSequence
testConvertBasesToString2() - Method in class tests.TestSequence
testConvertBasesToString3() - Method in class tests.TestSequence
testConvertBasesToString4() - Method in class tests.TestSequence
testConvertBasesToString5() - Method in class tests.TestSequence
testConvertDecimaleFalse() - Method in class tests.TestSequence
testConvertDecimaleTrue1() - Method in class tests.TestSequence
testConvertDecimaleTrue2() - Method in class tests.TestSequence
testConvertDecimaleTrue3() - Method in class tests.TestSequence
testCountPlusPlusUn() - Method in class tests.TestPalindrome
testDefaultPredictionOfStructureREALecoli() - Method in class testssuite01.TestAlgorithmsPartIV
testDefaultPredictionOfStructureREALecoliTeslist() - Method in class testssuite01.TestAlgorithmsPartIV
testEnsureFastaAlignment00() - Method in class testsalone.TestFichierFasta
testEnsureFastaAlignment01() - Method in class testsalone.TestFichierFasta
testEnsureFastaAlignment03() - Method in class testsalone.TestFichierFasta
testEnsureFastaAlignment04() - Method in class testsalone.TestFichierFasta
testEqualsFalseDe() - Method in class tests.TestBase
testEqualsFalseDe() - Method in class tests.TestNoeudArbreExec
testEqualsFalseDe() - Method in class tests.TestNoeudArbreExecListe
testEqualsFalseDe() - Method in class tests.TestPalindrome
testEqualsFalseTr() - Method in class tests.TestBase
testEqualsFalseUn() - Method in class tests.TestBase
testEqualsFalseUn() - Method in class tests.TestNoeudArbreExec
testEqualsFalseUn() - Method in class tests.TestNoeudArbreExecListe
testEqualsFalseUn() - Method in class tests.TestPalindrome
testEqualsPalindromeListeFalseDe() - Method in class tests.TestPalindromeListe
testEqualsPalindromeListeFalseUn() - Method in class tests.TestPalindromeListe
testEqualsPalindromeListeTrueDe() - Method in class tests.TestPalindromeListe
testEqualsPalindromeListeTrueUn() - Method in class tests.TestPalindromeListe
testEqualsSequenceFalseDe() - Method in class tests.TestSequence
testEqualsSequenceFalseUn() - Method in class tests.TestSequence
testEqualsSequenceListeFalseDe() - Method in class tests.TestAlignement
testEqualsSequenceListeFalseDe() - Method in class tests.TestSequenceListe
testEqualsSequenceListeFalseUn() - Method in class tests.TestAlignement
testEqualsSequenceListeFalseUn() - Method in class tests.TestSequenceListe
testEqualsSequenceListeTrueDe() - Method in class tests.TestAlignement
testEqualsSequenceListeTrueDe() - Method in class tests.TestSequenceListe
testEqualsSequenceListeTrueUn() - Method in class tests.TestAlignement
testEqualsSequenceListeTrueUn() - Method in class tests.TestSequenceListe
testEqualsSequenceTrueDe1() - Method in class tests.TestSequence
testEqualsSequenceTrueDe2() - Method in class tests.TestSequence
testEqualsSequenceTrueUn1() - Method in class tests.TestSequence
testEqualsSequenceTrueUn2() - Method in class tests.TestSequence
testEqualsTrue() - Method in class tests.TestBase
testEqualsTrueDe() - Method in class tests.TestNoeudArbreExec
testEqualsTrueDe() - Method in class tests.TestNoeudArbreExecListe
testEqualsTrueDe() - Method in class tests.TestPalindrome
testEqualsTrueUn() - Method in class tests.TestNoeudArbreExec
testEqualsTrueUn() - Method in class tests.TestNoeudArbreExecListe
testEqualsTrueUn() - Method in class tests.TestPalindrome
testEquivalenceFalse1() - Method in class tests.TestPalindrome
testEquivalenceFalse2() - Method in class tests.TestPalindrome
testEquivalenceTrue1() - Method in class tests.TestPalindrome
testEquivalenceTrue2() - Method in class tests.TestPalindrome
testEquivalenceTrue3() - Method in class tests.TestPalindrome
testExternalSequence1() - Method in class tests.TestSequence
testExternalSequence2() - Method in class tests.TestSequence
testFactorielle0() - Method in class tests.TestSequenceListe
testFactorielle1() - Method in class tests.TestSequenceListe
testFactorielle10() - Method in class tests.TestSequenceListe
testFactorielle11() - Method in class tests.TestSequenceListe
testFactorielle12() - Method in class tests.TestSequenceListe
testFactorielle13() - Method in class tests.TestSequenceListe
testFactorielle14() - Method in class tests.TestSequenceListe
testFactorielle15() - Method in class tests.TestSequenceListe
testFactorielle16() - Method in class tests.TestSequenceListe
testFactorielle17() - Method in class tests.TestSequenceListe
testFactorielle18() - Method in class tests.TestSequenceListe
testFactorielle19() - Method in class tests.TestSequenceListe
testFactorielle2() - Method in class tests.TestSequenceListe
testFactorielle3() - Method in class tests.TestSequenceListe
testFactorielle4() - Method in class tests.TestSequenceListe
testFactorielle5() - Method in class tests.TestSequenceListe
testFactorielle6() - Method in class tests.TestSequenceListe
testFactorielle7() - Method in class tests.TestSequenceListe
testFactorielle8() - Method in class tests.TestSequenceListe
testFactorielle9() - Method in class tests.TestSequenceListe
TestFichier - Class in testsalone
TestFichier() - Constructor for class testsalone.TestFichier
TestFichierBracket - Class in testsalone
TestFichierBracket() - Constructor for class testsalone.TestFichierBracket
TestFichierFasta - Class in testsalone
TestFichierFasta() - Constructor for class testsalone.TestFichierFasta
TestFichierRnaViz - Class in testsalone
TestFichierRnaViz() - Constructor for class testsalone.TestFichierRnaViz
testFichierRnaViz() - Method in class testsalone.TestFichierRnaViz
testGeneral01() - Method in class tests.TestAlignement
testGetAlignement() - Method in class testssuite01.TestAlgorithmsPartI
testGetBase() - Method in class tests.TestBase
testGetBase() - Method in class tests.TestSequence
testGetBaseAtRandom() - Method in class tests.TestSequence
testGetBaseAtUnder0() - Method in class tests.TestSequence
testGetBaseAtUpperLength() - Method in class tests.TestSequence
testGetBaseChar() - Method in class tests.TestSequence
testGetBaseInAlea() - Method in class tests.TestSequence
testGetBaseInAll() - Method in class tests.TestSequence
testGetBasePos() - Method in class tests.TestSequence
testGetChamps01() - Method in class testsalone.TestFichier
testGetChamps01() - Method in class testsalone.TestFichierBracket
testGetChamps01() - Method in class testsalone.TestFichierRnaViz
testGetChamps02() - Method in class testsalone.TestFichier
testGetChamps03() - Method in class testsalone.TestFichier
testGetChamps04() - Method in class testsalone.TestFichier
testGetCible() - Method in class testssuite01.TestAlgorithmsPartI
testGetCombiGUGCUn() - Method in class tests.TestSequence
testGetCountUn() - Method in class tests.TestPalindrome
testGetDecalage() - Method in class testssuite01.TestAlgorithmsPartI
testGetDelcrit() - Method in class testssuite01.TestAlgorithmsPartI
testGetEffetGCUn() - Method in class tests.TestSequence
testGetEffetGUGCUn() - Method in class tests.TestSequence
testGetEffetGUUn() - Method in class tests.TestSequence
testGetFilsInt() - Method in class tests.TestNoeudArbreExec
testGetFilsNotNull() - Method in class tests.TestNoeudArbreExec
testGetFilsNull() - Method in class tests.TestNoeudArbreExec
testGetGeneration1() - Method in class tests.TestNoeudArbreExec
testGetGeneration2() - Method in class tests.TestNoeudArbreExec
testGetGenerationIter1() - Method in class tests.TestNoeudArbreExec
testGetGenerationIter2() - Method in class tests.TestNoeudArbreExec
testGetGenerationIterMore() - Method in class tests.TestNoeudArbreExec
testGetGenerationMore() - Method in class tests.TestNoeudArbreExec
testGetHasSameSequenceFalse1() - Method in class tests.TestAlignement
testGetHasSameSequenceFalse2() - Method in class tests.TestAlignement
testGetHasSameSequenceTrue1() - Method in class tests.TestAlignement
testGetHasSameSequenceTrue2() - Method in class tests.TestAlignement
testGetHomologieUn() - Method in class tests.TestSequence
testGetIdecrit() - Method in class testssuite01.TestAlgorithmsPartI
testGetIndelsUn() - Method in class tests.TestSequence
testGetIndeterminateUn() - Method in class tests.TestSequence
testGetLbmin01() - Method in class tests.TestAlignement
testGetLbmin02() - Method in class tests.TestAlignement
testGetLbmin03() - Method in class tests.TestAlignement
testGetListe() - Method in class testsalone.TestFichierBracket
testGetListeDe() - Method in class tests.TestNoeudArbreExecListe
testGetListeDe() - Method in class tests.TestPalindromeListe
testGetListeDe() - Method in class tests.TestSequenceListe
testGetListeUn() - Method in class tests.TestNoeudArbreExecListe
testGetListeUn() - Method in class tests.TestPalindromeListe
testGetListeUn() - Method in class tests.TestSequenceListe
testGetLongBoucleMin() - Method in class testssuite01.TestAlgorithmsPartI
testGetLongPalindMin() - Method in class testssuite01.TestAlgorithmsPartI
testGetLpmin01() - Method in class tests.TestAlignement
testGetLpmin02() - Method in class tests.TestAlignement
testGetLpmin03() - Method in class tests.TestAlignement
testGetMatriceDe() - Method in class tests.TestAlignement
testGetMatriceScoreDe() - Method in class tests.TestAlignement
testGetMatriceScoreUn() - Method in class tests.TestAlignement
testGetMatriceUn() - Method in class tests.TestAlignement
testGetMaxHomology() - Method in class testssuite01.TestAlgorithmsPartI
testGetMinHomology() - Method in class testssuite01.TestAlgorithmsPartI
testGetNbErreursMax() - Method in class testssuite01.TestAlgorithmsPartI
testGetNbMaxSequence() - Method in class testssuite01.TestAlgorithmsPartI
testGetNbMinSequence() - Method in class testssuite01.TestAlgorithmsPartI
testGetNoeudArbreExec() - Method in class tests.TestNoeudArbreExecListe
testGetNoeudCourant() - Method in class testssuite01.TestAlgorithmsPartI
testGetNom01() - Method in class testsalone.TestFichier
testGetNom02() - Method in class testsalone.TestFichier
testGetNom03() - Method in class testsalone.TestFichier
testGetNom04() - Method in class testsalone.TestFichier
testGetNombreDecimale() - Method in class tests.TestSequence
testGetNombreErreurDe() - Method in class tests.TestPalindrome
testGetNombreErreurUn() - Method in class tests.TestPalindrome
testGetNombreMutationDoubleDe() - Method in class tests.TestPalindrome
testGetNombreMutationDoubleUn() - Method in class tests.TestPalindrome
testGetNombreMutationSimpleDe() - Method in class tests.TestPalindrome
testGetNombreMutationSimpleUn() - Method in class tests.TestPalindrome
testGetNomDe() - Method in class tests.TestSequence
testGetNomUn() - Method in class tests.TestSequence
testGetPalindromeDe() - Method in class tests.TestPalindromeListe
testGetPalindromesREALecolihainf() - Method in class tests.TestAlignement
testGetPalindromesREALecolivchol() - Method in class tests.TestAlignement
testGetPalindromeUn() - Method in class tests.TestPalindromeListe
testGetPereNotNull() - Method in class tests.TestNoeudArbreExec
testGetPereNull() - Method in class tests.TestNoeudArbreExec
testGetPertinenceDe() - Method in class tests.TestPalindrome
testGetPertinenceUn() - Method in class tests.TestPalindrome
testGetPoidDe() - Method in class tests.TestPalindrome
testGetPoidUn() - Method in class tests.TestPalindrome
testGetPosition() - Method in class tests.TestBase
testGetPositionDebutDe() - Method in class tests.TestPalindrome
testGetPositionDebutUn() - Method in class tests.TestPalindrome
testGetPositionFinDe() - Method in class tests.TestPalindrome
testGetPositionFinUn() - Method in class tests.TestPalindrome
testGetResolution() - Method in class testssuite01.TestAlgorithmsPartI
testGetScoreUn() - Method in class tests.TestSequence
testGetSequence() - Method in class tests.TestPalindrome
testGetSequence() - Method in class testsalone.TestFichierBracket
testGetSequence1DeFalse() - Method in class tests.TestAlignement
testGetSequence1DeTrue() - Method in class tests.TestAlignement
testGetSequence1UnFalse() - Method in class tests.TestAlignement
testGetSequence1UnTrue() - Method in class tests.TestAlignement
testGetSequence2DeFalse() - Method in class tests.TestAlignement
testGetSequence2DeTrue() - Method in class tests.TestAlignement
testGetSequence2UnFalse() - Method in class tests.TestAlignement
testGetSequence2UnTrue() - Method in class tests.TestAlignement
testGetSequenceBaseDe() - Method in class tests.TestSequence
testGetSequenceBaseToStringDe() - Method in class tests.TestSequence
testGetSequenceBaseToStringUn() - Method in class tests.TestSequence
testGetSequenceBaseUn() - Method in class tests.TestSequence
testGetSequenceCharDe() - Method in class tests.TestSequence
testGetSequenceCharToStringDe() - Method in class tests.TestSequence
testGetSequenceCharToStringUn() - Method in class tests.TestSequence
testGetSequenceCharUn() - Method in class tests.TestSequence
testGetSequenceDe() - Method in class tests.TestSequence
testGetSequenceDe() - Method in class tests.TestSequenceListe
testGetSequenceUn() - Method in class tests.TestSequence
testGetSequenceUn() - Method in class tests.TestSequenceListe
testGetStestDe() - Method in class tests.TestPalindromeListe
testGetStestUn() - Method in class tests.TestPalindromeListe
testGetSubSequenceDe() - Method in class tests.TestSequence
testGetSubSequenceUn() - Method in class tests.TestSequence
testGetType01() - Method in class testsalone.TestFichier
testGetType02() - Method in class testsalone.TestFichier
testGetType03() - Method in class testsalone.TestFichier
testGetType04() - Method in class testsalone.TestFichier
testGetVariabiliteUn() - Method in class tests.TestSequence
TestGlobalPDCFold00 - Class in testssuite02: This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
TestGlobalPDCFold00() - Constructor for class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold01() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold02() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold03() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold04() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold05() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold06() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold10() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold11() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold12() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold13() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold14() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold15() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold20() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold20Less() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold21() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold21Less() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold22() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold22Less() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold23() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold23Less() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold24() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold24Less() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold25() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold25Less() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold31() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold32() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold33() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold33Optimal() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold34() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold35() - Method in class testssuite02.TestGlobalPDCFold00
testGlobalPDCFold36() - Method in class testssuite02.TestGlobalPDCFold00
testHas() - Method in class tests.TestNoeudArbreExecListe
testHas() - Method in class tests.TestPalindromeListe
testHasFalse() - Method in class tests.TestSequenceListe
testHasFilsFalse() - Method in class tests.TestNoeudArbreExec
testHasFilsTrue() - Method in class tests.TestNoeudArbreExec
testHasTrue() - Method in class tests.TestSequenceListe
testInternalSequence1() - Method in class tests.TestSequence
testInternalSequence2() - Method in class tests.TestSequence
testIsBaseA() - Method in class tests.TestBase
testIsBaseC() - Method in class tests.TestBase
testIsBaseG() - Method in class tests.TestBase
testIsBaseGap() - Method in class tests.TestBase
testIsBaseN() - Method in class tests.TestBase
testIsBaseOrGapC() - Method in class tests.TestBase
testIsBaseOrGapG() - Method in class tests.TestBase
testIsBaseOrGapGap() - Method in class tests.TestBase
testIsBaseOrGapN() - Method in class tests.TestBase
testIsBaseOrGapQ() - Method in class tests.TestBase
testIsBaseOrGapR() - Method in class tests.TestBase
testIsBaseOrGapT() - Method in class tests.TestBase
testIsBaseOrGapY() - Method in class tests.TestBase
testIsBaseOrGapZ() - Method in class tests.TestBase
testIsBaseQ() - Method in class tests.TestBase
testIsBaseR() - Method in class tests.TestBase
testIsBaseT() - Method in class tests.TestBase
testIsBaseY() - Method in class tests.TestBase
testIsBaseZ() - Method in class tests.TestBase
testIsCompatible01() - Method in class tests.TestPalindrome
testIsCompatible02() - Method in class tests.TestPalindrome
testIsCompatible03() - Method in class tests.TestPalindrome
testIsCompatible04() - Method in class tests.TestPalindrome
testIsCompatible05() - Method in class tests.TestPalindrome
testIsCompatible06() - Method in class tests.TestPalindrome
testIsCompatible07() - Method in class tests.TestPalindrome
testIsCompatible08() - Method in class tests.TestPalindrome
testIsCompatible09() - Method in class tests.TestPalindrome
testIsCompatible10() - Method in class tests.TestPalindrome
testIsCompatible11() - Method in class tests.TestPalindrome
testIsCompatible12() - Method in class tests.TestPalindrome
testIsCompatible13() - Method in class tests.TestPalindrome
testIsCompatible14() - Method in class tests.TestPalindrome
testIsCompatibleWith01() - Method in class tests.TestPalindrome
testIsCompatibleWith02() - Method in class tests.TestPalindrome
testIsCompatibleWith03() - Method in class tests.TestPalindrome
testIsCompatibleWith04() - Method in class tests.TestPalindrome
testIsCompatibleWith05() - Method in class tests.TestPalindrome
testIsCompatibleWith06() - Method in class tests.TestPalindrome
testIsCompatibleWith07() - Method in class tests.TestPalindrome
testIsCompatibleWith1N() - Method in class tests.TestPalindrome
testIsCompatibleWith1R() - Method in class tests.TestPalindrome
testIsCompatibleWith2N() - Method in class tests.TestPalindrome
testIsCompatibleWith2R() - Method in class tests.TestPalindrome
testIsCompatibleWith3N() - Method in class tests.TestPalindrome
testIsCompatibleWith3R() - Method in class tests.TestPalindrome
testIsCompatibleWith4N() - Method in class tests.TestPalindrome
testIsCompatibleWith4R() - Method in class tests.TestPalindrome
testIsCompatibleWith5N() - Method in class tests.TestPalindrome
testIsCompatibleWith5R() - Method in class tests.TestPalindrome
testIsCompatibleWith6N() - Method in class tests.TestPalindrome
testIsCompatibleWith6R() - Method in class tests.TestPalindrome
testIsCompatibleWith7N() - Method in class tests.TestPalindrome
testIsCompatibleWith7R() - Method in class tests.TestPalindrome
testIsFastaAlignment00() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment01() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment02() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment03() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment04() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment05() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment06() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment07() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment08() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment09() - Method in class testsalone.TestFichierFasta
testIsFastaAlignment10() - Method in class testsalone.TestFichierFasta
testIsGoodPalindrome01() - Method in class tests.TestAlignement
testIsGoodPalindrome02() - Method in class tests.TestAlignement
testIsGoodPalindrome03() - Method in class tests.TestAlignement
testIsGoodPalindrome04() - Method in class tests.TestAlignement
testIsGoodPalindrome05() - Method in class tests.TestAlignement
testIsGoodPalindrome06() - Method in class tests.TestAlignement
testIsGoodPalindrome07() - Method in class tests.TestAlignement
testIsGoodPalindrome08() - Method in class tests.TestAlignement
testIsGoodPalindrome09() - Method in class tests.TestAlignement
testIsGoodPalindrome10() - Method in class tests.TestAlignement
testIsGoodPalindrome11() - Method in class tests.TestAlignement
testIsGoodPalindrome12() - Method in class tests.TestAlignement
testIsGoodPalindrome13() - Method in class tests.TestAlignement
testIsInFalse1() - Method in class tests.TestSequenceListe
testIsInFalse2() - Method in class tests.TestSequenceListe
testIsInFalse3() - Method in class tests.TestSequenceListe
testIsInTrue() - Method in class tests.TestSequenceListe
testIsScoreFalseDe() - Method in class tests.TestPalindrome
testIsScoreFalseUn() - Method in class tests.TestPalindrome
testIsScoreTrueDe() - Method in class tests.TestPalindrome
testIsScoreTrueUn() - Method in class tests.TestPalindrome
testIsSelectedCible0FalseDe() - Method in class tests.TestPalindrome
testIsSelectedCible0FalseDeNmut() - Method in class tests.TestPalindrome
testIsSelectedCible0FalseUn() - Method in class tests.TestPalindrome
testIsSelectedCible0FalseUnNmut() - Method in class tests.TestPalindrome
testIsSelectedCible0TrueDe() - Method in class tests.TestPalindrome
testIsSelectedCible0TrueDeNmut() - Method in class tests.TestPalindrome
testIsSelectedCible0TrueUn() - Method in class tests.TestPalindrome
testIsSelectedCible0TrueUnNmut() - Method in class tests.TestPalindrome
testIsSelectedCible10FalseDe() - Method in class tests.TestPalindrome: Conservation is false and Stest is 10 : bastest2 is selected as cible.
testIsSelectedCible10FalseDeNmut() - Method in class tests.TestPalindrome: Conservation is false and Stest is 10 : AND Nmut greater than 0 bastest2 is selected as cible.
testIsSelectedCible10FalseUn() - Method in class tests.TestPalindrome
testIsSelectedCible10FalseUnNmut() - Method in class tests.TestPalindrome
testIsSelectedCible10TrueDe() - Method in class tests.TestPalindrome: Conservation is true and Stest is 10 : (Nmut is 0) basetest2 NOT selected
testIsSelectedCible10TrueDeNmut() - Method in class tests.TestPalindrome: Conservation is true and Stest is 10 : AND Nmut greater than 0 bastest2 is selected as cible.
testIsSelectedCible10TrueUn() - Method in class tests.TestPalindrome
testIsSelectedCible10TrueUnNmut() - Method in class tests.TestPalindrome
testIsSelectedCible1FalseDe() - Method in class tests.TestPalindrome: Conservation is false and Stest is 1 : bastest2 is selected as cible.
testIsSelectedCible1FalseDeNmut() - Method in class tests.TestPalindrome: Conservation is false and Stest is 1 : AND Nmut greater than 0 bastest2 is selected as cible.
testIsSelectedCible1FalseUn() - Method in class tests.TestPalindrome
testIsSelectedCible1FalseUnNmut() - Method in class tests.TestPalindrome
testIsSelectedCible1TrueDe() - Method in class tests.TestPalindrome: Conservation is true and Stest is 1 : (Nmut is 0) basetest2 NOT selected
testIsSelectedCible1TrueDeNmut() - Method in class tests.TestPalindrome: conservation is true and Stest is 1 : basetest2 is selected as cible
testIsSelectedCible1TrueUn() - Method in class tests.TestPalindrome
testIsSelectedCible1TrueUnNmut() - Method in class tests.TestPalindrome
testIsSelectedTestDeTrue() - Method in class tests.TestPalindrome
testIsSelectedTestUnFalse1() - Method in class tests.TestPalindrome
testIsSelectedTestUnFalse2() - Method in class tests.TestPalindrome
testIsSelectedTestUnFalse3() - Method in class tests.TestPalindrome
testIsSelectedTestUnFalse4() - Method in class tests.TestPalindrome
testIsSelectedTestUnFalse5() - Method in class tests.TestPalindrome
testIsSelectedTestUnTrue() - Method in class tests.TestPalindrome
testIsTreeNotNull1() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull10() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull11() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull11BIS() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull12() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull12BIS() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull13() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull13BIS() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull14() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull14BIS() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull15() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull15BIS() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull16() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull16BIS() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull17() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull18() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull19() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull2() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull3() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull4() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull5() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull6() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull7() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull8() - Method in class tests.TestNoeudArbreExec
testIsTreeNotNull9() - Method in class tests.TestNoeudArbreExec
testLaunchExecutionREALecoli() - Method in class testssuite01.TestAlgorithmsPartIV
testLaunchExecutionREALecoliTeslist() - Method in class testssuite01.TestAlgorithmsPartIV
testLength01() - Method in class testsalone.TestFichier
testLength02() - Method in class testsalone.TestFichier
testLength03() - Method in class testsalone.TestFichier
testLength04() - Method in class testsalone.TestFichier
testLengthAlignDe() - Method in class tests.TestSequence
testLengthAlignUn() - Method in class tests.TestSequence
testLengthDe() - Method in class tests.TestNoeudArbreExecListe
testLengthDe() - Method in class tests.TestPalindrome
testLengthDe() - Method in class tests.TestPalindromeListe
testLengthDe() - Method in class tests.TestSequence
testLengthDe() - Method in class tests.TestSequenceListe
testLengthUn() - Method in class tests.TestNoeudArbreExecListe
testLengthUn() - Method in class tests.TestPalindrome
testLengthUn() - Method in class tests.TestPalindromeListe
testLengthUn() - Method in class tests.TestSequence
testLengthUn() - Method in class tests.TestSequenceListe
testLimitDecimaleFalse() - Method in class tests.TestSequence
testLimitDecimaleTrue() - Method in class tests.TestSequence
testMatchBasesCharCharAC() - Method in class tests.TestBase
testMatchBasesCharCharAG() - Method in class tests.TestBase
testMatchBasesCharCharAGap() - Method in class tests.TestBase
testMatchBasesCharCharAT() - Method in class tests.TestBase
testMatchBasesCharCharAU() - Method in class tests.TestBase
testMatchBasesCharCharCA() - Method in class tests.TestBase
testMatchBasesCharCharCG() - Method in class tests.TestBase
testMatchBasesCharCharCGap() - Method in class tests.TestBase
testMatchBasesCharCharCT() - Method in class tests.TestBase
testMatchBasesCharCharGA() - Method in class tests.TestBase
testMatchBasesCharCharGapA() - Method in class tests.TestBase
testMatchBasesCharCharGapC() - Method in class tests.TestBase
testMatchBasesCharCharGapG() - Method in class tests.TestBase
testMatchBasesCharCharGapGap() - Method in class tests.TestBase
testMatchBasesCharCharGapT() - Method in class tests.TestBase
testMatchBasesCharCharGC() - Method in class tests.TestBase
testMatchBasesCharCharGGap() - Method in class tests.TestBase
testMatchBasesCharCharGT() - Method in class tests.TestBase
testMatchBasesCharCharGU() - Method in class tests.TestBase
testMatchBasesCharCharTA() - Method in class tests.TestBase
testMatchBasesCharCharTC() - Method in class tests.TestBase
testMatchBasesCharCharTG() - Method in class tests.TestBase
testMatchBasesCharCharTGap() - Method in class tests.TestBase
testMatchBasesCharCharUA() - Method in class tests.TestBase
testMatchBasesCharCharUG() - Method in class tests.TestBase
testMatchBasesGapCharCharAGap() - Method in class tests.TestBase
testMatchBasesGapCharCharCGap() - Method in class tests.TestBase
testMatchBasesGapCharCharGapA() - Method in class tests.TestBase
testMatchBasesGapCharCharGapC() - Method in class tests.TestBase
testMatchBasesGapCharCharGapG() - Method in class tests.TestBase
testMatchBasesGapCharCharGapGap() - Method in class tests.TestBase
testMatchBasesGapCharCharGapT() - Method in class tests.TestBase
testMatchBasesGapCharCharGapU() - Method in class tests.TestBase
testMatchBasesGapCharCharGGap() - Method in class tests.TestBase
testMatchBasesGapCharCharTGap() - Method in class tests.TestBase
testMatchBasesGapCharCharUGap() - Method in class tests.TestBase
testMaxInt1() - Method in class tests.TestAlignement
testMaxInt2() - Method in class tests.TestAlignement
testMaxInt3() - Method in class tests.TestAlignement
testMaxInt4() - Method in class tests.TestAlignement
testMayBeGoodCT01() - Method in class testssuite01.TestCompatibilityTreament01Bis
testMayBeGoodCT02() - Method in class testssuite01.TestCompatibilityTreament01Bis
testMayBeGoodCT03() - Method in class testssuite01.TestCompatibilityTreament01Bis
testNbErreursPlusPlus() - Method in class tests.TestPalindrome
testNbMutDoublePlusPlus() - Method in class tests.TestPalindrome
testNbMutSimplePlusPlus() - Method in class tests.TestPalindrome
testNewSequenceDeductionClone() - Method in class testssuite01.TestAlgorithmsPartII
testNewSequenceDeductionNotClone() - Method in class testssuite01.TestAlgorithmsPartII
TestNoeudArbreExec - Class in tests: Test class about modele.NoeudArbreExec class.
TestNoeudArbreExec() - Constructor for class tests.TestNoeudArbreExec
TestNoeudArbreExecListe - Class in tests: Test class about modele.NoeudArbreExecListe.
TestNoeudArbreExecListe() - Constructor for class tests.TestNoeudArbreExecListe
TestPalindrome - Class in tests: Test class about modele.Palindrome class.
TestPalindrome() - Constructor for class tests.TestPalindrome
TestPalindromeListe - Class in tests: Test class about modele.PalindromeListe class.
TestPalindromeListe() - Constructor for class tests.TestPalindromeListe
TestPalindromeListeListe - Class in tests: Test class about modele.PalindromeListeListe class.
TestPalindromeListeListe() - Constructor for class tests.TestPalindromeListeListe
TestPDCFold00 - Class in testsorigin: This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
TestPDCFold00() - Constructor for class testsorigin.TestPDCFold00
testPDCFold01() - Method in class testsorigin.TestPDCFold00
TestPDCFold01 - Class in testsorigin: This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
TestPDCFold01() - Constructor for class testsorigin.TestPDCFold01
testPDCFold02() - Method in class testsorigin.TestPDCFold00
TestPDCFold02 - Class in testsorigin: This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
TestPDCFold02() - Constructor for class testsorigin.TestPDCFold02
testPDCFold03() - Method in class testsorigin.TestPDCFold00
TestPDCFold03 - Class in testsorigin: This class to test the P-DCfold algorithm as defined in source code of Stefan Engelen and as discovered...
TestPDCFold03() - Constructor for class testsorigin.TestPDCFold03
testPDCFold04() - Method in class testsorigin.TestPDCFold00
testPDCFold05() - Method in class testsorigin.TestPDCFold00
testPDCFold06() - Method in class testsorigin.TestPDCFold00
testPDCFold10() - Method in class testsorigin.TestPDCFold00
testPDCFold11() - Method in class testsorigin.TestPDCFold00
testPDCFold12() - Method in class testsorigin.TestPDCFold00
testPDCFold13() - Method in class testsorigin.TestPDCFold00
testPDCFold14() - Method in class testsorigin.TestPDCFold00
testPDCFold15() - Method in class testsorigin.TestPDCFold00
testPDCFold20() - Method in class testsorigin.TestPDCFold00
testPDCFold20Less() - Method in class testsorigin.TestPDCFold00
testPDCFold21() - Method in class testsorigin.TestPDCFold00
testPDCFold21Less() - Method in class testsorigin.TestPDCFold00
testPDCFold22() - Method in class testsorigin.TestPDCFold00
testPDCFold22Less() - Method in class testsorigin.TestPDCFold00
testPDCFold23() - Method in class testsorigin.TestPDCFold00
testPDCFold23Less() - Method in class testsorigin.TestPDCFold00
testPDCFold24() - Method in class testsorigin.TestPDCFold00
testPDCFold24Less() - Method in class testsorigin.TestPDCFold00
testPDCFold25() - Method in class testsorigin.TestPDCFold00
testPDCFold25Less() - Method in class testsorigin.TestPDCFold00
testPDCFold31() - Method in class testsorigin.TestPDCFold00
testPDCFold32() - Method in class testsorigin.TestPDCFold00
testPDCFold33() - Method in class testsorigin.TestPDCFold00
testPDCFold34() - Method in class testsorigin.TestPDCFold00
testPDCFold35() - Method in class testsorigin.TestPDCFold00
testPDCFold36() - Method in class testsorigin.TestPDCFold00
testPDCFoldMore01() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore01() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore01() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore02() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore02() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore02() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore03() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore03() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore03() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore0300() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0301() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0302() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0303() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0304() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0305() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0306() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0307() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0308() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0309() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0310() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0311() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore0312() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore04() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore04() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore04() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore05() - Method in class testsorigin.TestPDCFold01
testPDCFoldMore05() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore05() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore06() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore06() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore07() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore07() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore08() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore08() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore09() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore09() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore10() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore10() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore11() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore11() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore12() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore12() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore13() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore13() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore14() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore14() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore15() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore15() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore16() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore16() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore17() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore17() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore18() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore18() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore19() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore19() - Method in class testsorigin.TestPDCFold03
testPDCFoldMore20() - Method in class testsorigin.TestPDCFold02
testPDCFoldMore20() - Method in class testsorigin.TestPDCFold03
testPrintFile() - Method in class testsalone.TestFichier
testReadFile() - Method in class testsalone.TestFichier
testRemoveNoeudArbreExecIntDe() - Method in class tests.TestNoeudArbreExecListe
testRemoveNoeudArbreExecIntTr() - Method in class tests.TestNoeudArbreExecListe
testRemoveNoeudArbreExecIntUn() - Method in class tests.TestNoeudArbreExecListe
testRemoveNoeudArbreExecNoeudArbreExecDe() - Method in class tests.TestNoeudArbreExecListe
testRemoveNoeudArbreExecNoeudArbreExecUn() - Method in class tests.TestNoeudArbreExecListe
testRemoveNoeudArbreExecPalindrome() - Method in class tests.TestNoeudArbreExecListe
testRemovePalindromeIntDe() - Method in class tests.TestPalindromeListe
testRemovePalindromeIntTr() - Method in class tests.TestPalindromeListe
testRemovePalindromeIntUn() - Method in class tests.TestPalindromeListe
testRemovePalindromePalindromeDe() - Method in class tests.TestPalindromeListe
testRemovePalindromePalindromeQu() - Method in class tests.TestPalindromeListe
testRemovePalindromePalindromeTr() - Method in class tests.TestPalindromeListe
testRemovePalindromePalindromeUn() - Method in class tests.TestPalindromeListe
testRemoveSequenceIntCi() - Method in class tests.TestSequenceListe
testRemoveSequenceIntDe() - Method in class tests.TestSequenceListe
testRemoveSequenceIntQu() - Method in class tests.TestSequenceListe
testRemoveSequenceIntTr() - Method in class tests.TestSequenceListe
testRemoveSequenceIntUn() - Method in class tests.TestSequenceListe
testRemoveSequenceSequenceDe() - Method in class tests.TestSequenceListe
testRemoveSequenceSequenceQu() - Method in class tests.TestSequenceListe
testRemoveSequenceSequenceTr() - Method in class tests.TestSequenceListe
testRemoveSequenceSequenceUn() - Method in class tests.TestSequenceListe
testRemoveSubSequenceDe() - Method in class tests.TestSequence
testRemoveSubSequenceUn() - Method in class tests.TestSequence
testRsshFalse1() - Method in class tests.TestPalindrome
testRsshFalse2() - Method in class tests.TestPalindrome
testRsshFalse3() - Method in class tests.TestPalindrome
testRsshTrue1() - Method in class tests.TestPalindrome
testRsshTrue2() - Method in class tests.TestPalindrome
testRsshTrue3() - Method in class tests.TestPalindrome
tests - package tests: First part of tests : the simpliest classes of the model.
tests - Variable in class testsorigin.TestPDCFold00
tests - Variable in class testsorigin.TestPDCFold01
tests - Variable in class testsorigin.TestPDCFold02
tests - Variable in class testsorigin.TestPDCFold03
tests - Variable in class testssuite02.TestGlobalPDCFold00
testsalone - package testsalone: Other part of tests : Some parts and classes of interface / use.
testSAPColiAersalThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiColiThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiExampleThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiHaeinfThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiSheputThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiSingleAersalThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiSingleColiThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiSingleHaeinfThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiSingleSheputThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiSingleVibCholThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiTeslistThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPColiVibcholThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testSAPCompatibilityTreatmentREALecoliColi() - Method in class testssuite01.TestAlgorithmsPartIV
testSAPCompatibilityTreatmentREALecoliOpt() - Method in class testssuite01.TestAlgorithmsPartIV
testScoreAAthenHelixAUorUA() - Method in class tests.TestAlignement: Not [...] because of impact before helix
testScoreAAthenHelixGCorCG() - Method in class tests.TestAlignement
testScoreAAthenHelixGU() - Method in class tests.TestAlignement
testScoreAAthenHelixUG() - Method in class tests.TestAlignement
testScoreAUandUA() - Method in class tests.TestAlignement
testScoreBaseGap() - Method in class tests.TestAlignement
testScoreBasesAA() - Method in class tests.TestBase
testScoreBasesAG() - Method in class tests.TestBase
testScoreBasesAT() - Method in class tests.TestBase
testScoreBasesAU() - Method in class tests.TestBase
testScoreBasesCC() - Method in class tests.TestBase
testScoreBasesCG() - Method in class tests.TestBase
testScoreBasesGA() - Method in class tests.TestBase
testScoreBasesGC() - Method in class tests.TestBase
testScoreBasesGG() - Method in class tests.TestBase
testScoreBasesGT() - Method in class tests.TestBase
testScoreBasesGU() - Method in class tests.TestBase
testScoreBasesTA() - Method in class tests.TestBase
testScoreBasesTG() - Method in class tests.TestBase
testScoreBasesTT() - Method in class tests.TestBase
testScoreBasesUA() - Method in class tests.TestBase
testScoreBasesUG() - Method in class tests.TestBase
testScoreBasesUU() - Method in class tests.TestBase
testScoreBasesXX() - Method in class tests.TestBase
testScoreGapBase() - Method in class tests.TestAlignement
testScoreGAthenHelixAUorUA() - Method in class tests.TestAlignement
testScoreGAthenHelixGCorCG() - Method in class tests.TestAlignement
testScoreGAthenHelixGU() - Method in class tests.TestAlignement
testScoreGAthenHelixUG() - Method in class tests.TestAlignement
testScoreGCandCG() - Method in class tests.TestAlignement
testScoreNOTHINGthenHelixAUorUA() - Method in class tests.TestAlignement
testScoreNOTHINGthenHelixGCorCG() - Method in class tests.TestAlignement
testScoreNOTHINGthenHelixGU() - Method in class tests.TestAlignement
testScoreNOTHINGthenHelixUG() - Method in class tests.TestAlignement
testScoreNOTR5GURYthenGUorUG() - Method in class tests.TestAlignement
testScoreNOTR5GUYRthenGU() - Method in class tests.TestAlignement
testScoreNullCombination() - Method in class tests.TestAlignement
testScoreR5GUYRthenGU() - Method in class tests.TestAlignement
testScoreUGandGU() - Method in class tests.TestAlignement
testScoreXX() - Method in class tests.TestAlignement
testSearchAllStructuralPalindromesREALEcoli() - Method in class testssuite01.TestAlgorithmsPartIV: expected some results
testSearchAllStructuralPalindromesREALEcoliTeslist() - Method in class testssuite01.TestAlgorithmsPartIV
testSearchAnchorPointsColiAersal() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchAnchorPointsColiColi() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchAnchorPointsColiExample() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchAnchorPointsColiHaeinf() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchAnchorPointsColiSheput() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchAnchorPointsColiTeslist() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchAnchorPointsColiVibchol() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchAnchorPointsRandom() - Method in class testssuite01.TestAlgorithmsPartII
testSearchAnchorPointsRealECOLI() - Method in class testssuite01.TestAlgorithmsPartII
testSearchStructuralPalindromeColiAersal() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchStructuralPalindromeColiColi() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchStructuralPalindromeColiExample() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchStructuralPalindromeColiHaeinf() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchStructuralPalindromeColiSheput() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchStructuralPalindromeColiTeslist() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchStructuralPalindromeColiVibchol() - Method in class testssuite01.TestAlgorithmsPartIII
testSearchStructuralPalindromeREALecoli() - Method in class testssuite01.TestAlgorithmsPartIV: expected some results
TestSequence - Class in tests: Test class about modele.Sequence class.
TestSequence() - Constructor for class tests.TestSequence
TestSequenceListe - Class in tests: Test class about modele.SequenceListe class.
TestSequenceListe() - Constructor for class tests.TestSequenceListe
testSequencesChoice() - Method in class aloneinterfaces.AloneProcessus: To find the good Sequences to use for computing.
testSequencesChoice() - Method in class aloneinterfaces.AloneProcessus_old: To find the good Sequences to use for computing.
testSetBase() - Method in class tests.TestBase
testSetCombiGUGCUn() - Method in class tests.TestSequence
testSetCountZeroUn() - Method in class tests.TestPalindrome
testSetDecalage() - Method in class testssuite01.TestAlgorithmsPartI
testSetDelcrit1() - Method in class testssuite01.TestAlgorithmsPartI
testSetDelcrit2() - Method in class testssuite01.TestAlgorithmsPartI
testSetDelcrit3() - Method in class testssuite01.TestAlgorithmsPartI
testSetEffetGCUn() - Method in class tests.TestSequence
testSetEffetGUGCUn() - Method in class tests.TestSequence
testSetEffetGUUn() - Method in class tests.TestSequence
testSetHomologieUn() - Method in class tests.TestSequence
testSetIdecrit1() - Method in class testssuite01.TestAlgorithmsPartI
testSetIdecrit2() - Method in class testssuite01.TestAlgorithmsPartI
testSetIdecrit3() - Method in class testssuite01.TestAlgorithmsPartI
testSetIndelsUn() - Method in class tests.TestSequence
testSetIndeterminateUn() - Method in class tests.TestSequence
testSetLbmin() - Method in class tests.TestAlignement
testSetListe() - Method in class tests.TestNoeudArbreExecListe
testSetListe() - Method in class tests.TestPalindromeListe
testSetListe() - Method in class tests.TestSequenceListe
testSetLongBoucleMin() - Method in class testssuite01.TestAlgorithmsPartI
testSetLongPalindMin() - Method in class testssuite01.TestAlgorithmsPartI
testSetLpmin() - Method in class tests.TestAlignement
testSetMaxHomology1() - Method in class testssuite01.TestAlgorithmsPartI
testSetMaxHomology2() - Method in class testssuite01.TestAlgorithmsPartI
testSetMaxHomology3() - Method in class testssuite01.TestAlgorithmsPartI
testSetMinHomology1() - Method in class testssuite01.TestAlgorithmsPartI
testSetMinHomology2() - Method in class testssuite01.TestAlgorithmsPartI
testSetMinHomology3() - Method in class testssuite01.TestAlgorithmsPartI
testSetNbErreursMax() - Method in class testssuite01.TestAlgorithmsPartI
testSetNbMaxSequence1() - Method in class testssuite01.TestAlgorithmsPartI
testSetNbMaxSequence2() - Method in class testssuite01.TestAlgorithmsPartI
testSetNbMinSequence1() - Method in class testssuite01.TestAlgorithmsPartI
testSetNbMinSequence2() - Method in class testssuite01.TestAlgorithmsPartI
testSetNbMinSequence3() - Method in class testssuite01.TestAlgorithmsPartI
testSetNoeudArbreExec() - Method in class tests.TestNoeudArbreExecListe
testSetNombreDecimale() - Method in class tests.TestSequence
testSetNombreErreur() - Method in class tests.TestPalindrome
testSetNombreMutationDouble() - Method in class tests.TestPalindrome
testSetNombreMutationSimple() - Method in class tests.TestPalindrome
testSetNomDe() - Method in class tests.TestSequence
testSetNomUn() - Method in class tests.TestSequence
testSetPalindromeDe() - Method in class tests.TestPalindromeListe
testSetPalindromeQu() - Method in class tests.TestPalindromeListe
testSetPalindromeTr() - Method in class tests.TestPalindromeListe
testSetPalindromeUn() - Method in class tests.TestPalindromeListe
testSetPoid() - Method in class tests.TestPalindrome
testSetPosition() - Method in class tests.TestBase
testSetResolution() - Method in class testssuite01.TestAlgorithmsPartI
testSetSequence() - Method in class tests.TestPalindrome
testSetSequenceCi() - Method in class tests.TestSequenceListe
testSetSequenceDe() - Method in class tests.TestSequenceListe
testSetSequenceQu() - Method in class tests.TestSequenceListe
testSetSequenceTr() - Method in class tests.TestSequenceListe
testSetSequenceUn() - Method in class tests.TestSequenceListe
testSetVariabiliteUn() - Method in class tests.TestSequence
testsorigin - package testsorigin: These tests according to original code of Stefan Engelen (2006)
Tests are using JUnit 3.8.1
testSortByBeginPositionGrowing() - Method in class tests.TestPalindromeListe
testSortByEndPositionGrowing() - Method in class tests.TestPalindromeListe
testssuite01 - package testssuite01: Second part of tests : tests about algorithms of P-DCFold.
testssuite02 - package testssuite02: "Third" part of tests : tests about algorithms of P-DCFold.
testVariableZonesTreatmentColiAersal() - Method in class testssuite01.TestAlgorithmsPartIII
testVariableZonesTreatmentColiColi() - Method in class testssuite01.TestAlgorithmsPartIII
testVariableZonesTreatmentColiExample() - Method in class testssuite01.TestAlgorithmsPartIII
testVariableZonesTreatmentColiHaeinf() - Method in class testssuite01.TestAlgorithmsPartIII
testVariableZonesTreatmentColiSheput() - Method in class testssuite01.TestAlgorithmsPartIII
testVariableZonesTreatmentColiTesList() - Method in class testssuite01.TestAlgorithmsPartIII
testVariableZonesTreatmentColiVibchol() - Method in class testssuite01.TestAlgorithmsPartIII
testVariableZonesTreatmentRandom() - Method in class testssuite01.TestAlgorithmsPartII
testVariableZonesTreatmentREALecoli() - Method in class testssuite01.TestAlgorithmsPartII
testVZTColiAersalThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testVZTColiColiThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testVZTColiExampleThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testVZTColiHaeinfThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testVZTColiSheputThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testVZTColiTeslistThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testVZTColiVibcholThenCT() - Method in class testssuite01.TestAlgorithmsPartIII
testVZTCompatibilityTreatmentREALecoliColi() - Method in class testssuite01.TestAlgorithmsPartIV
testVZTCompatibilityTreatmentREALecoliOpt() - Method in class testssuite01.TestAlgorithmsPartIV
textedebut - Variable in class aloneinterfaces.Interface11: To indicate beginning of palindrome.
textedebut - Variable in class aloneinterfaces.Interface4: Result text area visualization.
textedebut - Variable in class aloneinterfaces.Interface6: Start of zone to analyse (test area).
texteFichier - Variable in class aloneinterfaces.Interface0: File name area visualization.
textefichier1 - Variable in class aloneinterfaces.Interface8
textefichier2 - Variable in class aloneinterfaces.Interface8
textefichiersauve - Variable in class aloneinterfaces.Interface10: Text area for name of file recording.
textefin - Variable in class aloneinterfaces.Interface11: To indicate end of palindrome.
textefin - Variable in class aloneinterfaces.Interface4: Result text area visualization.
textefin - Variable in class aloneinterfaces.Interface6: End of zone to analyse (test area).
textegraphiquesauve - Variable in class aloneinterfaces.Interface10: Text area for name of graphic recording.
textelmin - Variable in class aloneinterfaces.Interface4: Result text area visualization.
textelmin - Variable in class aloneinterfaces.Interface6: Lmin text area.
textelongueur - Variable in class aloneinterfaces.Interface11: To indicate length of palindrome.
textelongueur - Variable in class aloneinterfaces.Interface4: Result text area visualization.
textelongueur - Variable in class aloneinterfaces.Interface8
texteSequence - Variable in class aloneinterfaces.Interface0: Area where user can paste alignment.
thmar - Static variable in class testsorigin.Alignedtmrna
thmar - Static variable in class testssuite02.Alignedtmrna
ththe - Static variable in class testsorigin.Alignedtmrna
ththe - Static variable in class testssuite02.Alignedtmrna
thwei - Static variable in class testsorigin.Alignedtmrna
thwei - Static variable in class testssuite02.Alignedtmrna
tiff - Static variable in class alonefichiers.FiltreUtils: bracket sequence+palindrome(s)
to_File(PrintWriter) - Method in class origincomment.ADN1: To print the name of the sequence in a PrintWriter output.
to_File(String) - Method in class origincomment.ADN1cible: RESULT TREAMENT
"This method write results in a file"
to_File(PrintWriter) - Method in class origincomment.Palindrome1: To print begin and end of palindrome in a PrintWriter output
to_File(PrintWriter) - Method in class origincomment.Palindrome1cible: "Following methods sorted by use order in ADN1 Class". (12)
Add the "real length" to the file.
toString() - Method in class modele.ConvertedProfil
toString(int, int) - Method in class modele.Sequence: SOME SHOW FOR VIEW
"To visualize considered sequence [current instance]"
CIBLE SEQUENCE
toString(int, int) - Method in class modele.SequenceCible: Deprecated. SOME SHOW FOR VIEW
"To visualize considered sequence [current instance]"
toString(int, int) - Method in class origincomment.ADN1cible: SOME SHOW FOR VIEW
"To visualize considered sequence [current instance]"
toString(int, int) - Method in class origincomment.ADN1test: To get a String of current instance sequence, between debut and fin.
toString() - Method in class origincomment.Appariement
toString() - Method in class origincomment.Case
toString() - Method in class origincomment.Matrice_ALN
toString() - Method in class origincomment.Palindrome1: "Methode toString pour permettre l'affichage des caracteristiques de chaque palindrome de la sequence."
toString() - Method in class origincomment.Palindrome1cible: "This method to permit show of characteristiks of each palindromeof sequence
toString() - Method in class origincomment.Profil
toString() - Method in class origincomment.Resultat
toString_web() - Method in class origincomment.Palindrome1: Some changes to this procedure to make results appears for web / HTML.
toString_web() - Method in class origincomment.Palindrome1cible: Some changes to this procedure to make results appears for web / HTML.
total - Static variable in class origincomment.ADN1test: "For the count of time of optimal result."
tous_les_palindromes() - Method in class modele.ArbreExec: "All Palindromes"
This method to keep compatibility with algorithms' implementation of Stefan Engelen and its conversion.
tous_les_palindromes() - Method in class origincomment.ArbrePalindrome: "All Palindromes"
toutes_combinaisons(ADN1test[], ADN1test[], Vector, int, int) - Static method in class origincomment.ADN1test: All combinations.
traitement_Incompatibilite(Palindrome[], boolean, double, int, int) - Static method in class modele.AlgorithmsStefan: "Following methods sorted by use order in ADN1 Class". (1)
"This method is about incompatibility between palindromes of same sequence, sorting palindromes by relevance (single and double mutations) then removing every palindrome incompatible with previous more relevant.
traitement_Incompatibilite(Palindrome1cible[], boolean, double, int, int) - Static method in class modele.OriginAlgorithmsStefan: "Following methods sorted by use order in ADN1 Class". (1)
"This method is about incompatibility between palindromes of same sequence, sorting palindromes by relevance (single and double mutations) then removing every palindrome incompatible with previous more relevant.
traitement_Incompatibilite(Palindrome[], boolean, double, int, int) - Static method in class modele.OtherAlgorithmsStefan: "Following methods sorted by use order in ADN1 Class". (1)
"This method is about incompatibility between palindromes of same sequence, sorting palindromes by relevance (single and double mutations) then removing every palindrome incompatible with previous more relevant.
traitement_Incompatibilite(Palindrome1cible[], boolean, double, int, int) - Static method in class origincomment.Palindrome1cible: "Following methods sorted by use order in ADN1 Class". (1)
"This method is about incompatibility between palindromes of same sequence, sorting palindromes by relevance (single and double mutations) then removing every palindrome incompatible with previous more relevant.
traitement_Zone_Variable(Sequence, int, int, int, Sequence[], int, int, boolean, int) - Method in class modele.AlgorithmsStefan: COMPATIBLE PALINDROME SEARCH
"This method to search anchors points in a highly varible part of sequence"
traitement_Zone_Variable(ADN1cible, int, int, int, ADN1test[], int, int, boolean, int) - Method in class modele.OriginAlgorithmsStefan: COMPATIBLE PALINDROME SEARCH
"This method to search anchors points in a highly varible part of sequence"
traitement_Zone_Variable(Sequence, int, int, int, Sequence[], int, int, boolean, int) - Method in class modele.OtherAlgorithmsStefan: COMPATIBLE PALINDROME SEARCH
"This method to search anchors points in a highly varible part of sequence"
traitement_Zone_Variable(ADN1cible, int, int, int, ADN1test[], int, int, boolean, int) - Method in class origincomment.ADN1cible: COMPATIBLE PALINDROME SEARCH
"This method to search anchors points in a highly varible part of sequence"
traitementIncompatibilite(PalindromeListe, boolean, double, int, int) - Static method in class modele.AlgorithmsCT01: Deprecated. CompatibilityTreament...
trier(Sequence, Sequence[], int) - Static method in class modele.AlgoStefanConverter: To sort the tab...
trier(ADN1test, ADN1test[], int) - Static method in class modele.OriginAlgoStefanConverter: To sort the tab...
trier(Sequence, Sequence[], int) - Static method in class modele.OtherAlgoStefanConverter: To sort the tab...
trier(ADN1test, ADN1test[], int) - Static method in class origincomment.ADN1test: To sort the tab...
trier(ADN1test, ADN1test[], int) - Method in class origincomment.StefanErrors: Instance of object is given in procedure of the same instance.
trier_Palindrome_Comp(Palindrome[]) - Static method in class modele.AlgorithmsStefan: "Following methods sorted by use order in ADN1 Class". (4)
"This method sort palindromes found at step i of target sequence from their relevance
This method is used by the method that search compatible palindromes
trier_Palindrome_Comp(Palindrome1cible[]) - Static method in class modele.OriginAlgorithmsStefan: "Following methods sorted by use order in ADN1 Class". (4)
"This method sort palindromes found at step i of target sequence from their relevance
This method is used by the method that search compatible palindromes
trier_Palindrome_Comp(Palindrome[]) - Static method in class modele.OtherAlgorithmsStefan: "Following methods sorted by use order in ADN1 Class". (4)
"This method sort palindromes found at step i of target sequence from their relevance
This method is used by the method that search compatible palindromes
trier_Palindrome_Comp(Palindrome1cible[]) - Static method in class origincomment.Palindrome1cible: "Following methods sorted by use order in ADN1 Class". (4)
"This method sort palindromes found at step i of target sequence from their relevance
This method is used by the method that search compatible palindromes
trier_Palindrome_Debut(Palindrome1cible[]) - Method in class origincomment.Palindrome1cible: "Following methods sorted by use order in ADN1 Class". (8)
"This method sort a table of palindromes by the begin position"
trier_Palindrome_Fin(Palindrome1cible[]) - Method in class origincomment.Palindrome1cible: "Following methods sorted by use order in ADN1 Class". (7)
"This method sort a table of palindromes by the end position"
trier_structures() - Method in class modele.ArbreExec: Sorting the structureS.
trier_structures() - Method in class origincomment.ArbrePalindrome: Sorting the structureS.
trouvePseudonoeud - Variable in class modele.AlgorithmsStefan: "Global attributes of work"
Have pseudoknots been found in current step...
trouvePseudonoeud - Variable in class modele.OriginAlgorithmsStefan: "Global attributes of work"
Have pseudoknots been found in current step...
trouvePseudonoeud - Variable in class modele.OtherAlgorithmsStefan: "Global attributes of work"
Have pseudoknots been found in current step...
trouvePseudonoeud - Variable in class origincomment.ADN1cible: "Global attributes of work"
Have pseudoknots been found in current step...
trpal - Static variable in class testsorigin.Alignedtmrna
trpal - Static variable in class testssuite02.Alignedtmrna
type - Variable in class origincomment.StefanErrors
typeARN - Variable in class aloneinterfaces.Interface1
typeARN - Variable in class modele.AlgorithmsStefan: "Global attribute with signification.
typeARN - Variable in class modele.OriginAlgorithmsStefan: "Global attribute with signification.
typeARN - Variable in class modele.OtherAlgorithmsStefan: "Global attribute with signification.
typeARN - Variable in class origincomment.ADN1cible: "Global attribute with signification.
typeCritere - Variable in class aloneinterfaces.Interface1
typeCritere - Variable in class modele.AlgorithmsStefan: "Global attribute with signification.
typeCritere - Variable in class modele.OriginAlgorithmsStefan: "Global attribute with signification.
typeCritere - Variable in class modele.OtherAlgorithmsStefan: "Global attribute with signification.
typeCritere - Variable in class modele.Palindrome: Cible : criterion type (default is TAUX_MUT == 3)
typeCritere - Variable in class origincomment.ADN1cible: "Global attribute with signification.
typeCritere - Variable in class origincomment.Palindrome1cible: "Public attribute"
Criterion type (default is TAUX_MUT).
typeRecherche - Variable in class modele.AlgorithmsStefan: "Global attribute with signification.
typeRecherche - Variable in class modele.OriginAlgorithmsStefan: "Global attribute with signification.
typeRecherche - Variable in class modele.OtherAlgorithmsStefan: "Global attribute with signification.
typeRecherche - Variable in class origincomment.ADN1cible: "Global attribute with signification.

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