EvryRNA : IRSOM2

IRSOM2

PREDICTION

  • Paste your sequences in FASTA format
  • Upload your sequences to predict.
    Processing times of example files are described in the "Example files" section below.
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  • The optimal value of this parameter varies depending on the species (0.8 is for H. sapiens).
    Please refer to the article about the IRSOM method.

    • Dataset used in Platon et al., 2018
    • This FASTA file is constituted with:
      • 22978 coding RNA sequences
      • 15085 non-coding RNA sequences
    • Processing time: ~ 2min45s

     

    • These sequences are a subset of the Homo sapiens dataset.
    • This FASTA file is constituted with:
      • 500 coding RNA sequences
      • 500 non-coding RNA sequences
    • Processing time: ~ 15s

     

    • Dataset from the SPENCER database
    • This FASTA file is constituted with 733 translated lncRNA sequences
    • Processing time: ~ 12s

     

    • Dataset from the LncPep database
    • This FASTA file is constituted with 1525 translated lncRNA sequences
    • Processing time: ~ 14s

     

    • Dataset from the LncPep database
    • This FASTA file is constituted with 299 translated lncRNA sequences
    • Processing time: ~ 11s

     

    • Dataset from the LncPep database
    • This FASTA file is constituted with 16 translated lncRNA sequences
    • Processing time: ~ 10s

     

    • Processing times may vary depending on the number of requests on calculation servers.
    For any questions, comments or suggestions about IRSOM, please feel free to contact: fariza.tahi@ibisc.univ-evry.fr