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EvryRNA : miRNAFold
Ab initio miRNA prediction in genomes
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miRNAFold
Multifasta file
If you want to run miRNAFold with a single sequence, please click on the following link:
Single sequence
MULTIFASTA file (100 MB max):
Use example file:
Multiple artificial sequence
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Sliding window size:
Select the size of the searching window on the genome (default value:150)
Minimum hairpin size:
Select the minimal size of the hairpins that miRNAFold will search (default value: 0)
Maximal thermodynamic value of hairpins:
Select the maximal energy of hairpins that miRNAFold will search (default value:0)
Percentage of verified features:
Select the percentage of verified features, this parameter will change the number of results. (default value:70)
Species Parameters:
All genomes
Homo sapiens
Acyrthosiphon pisum
Aedes aegypti
Amborella trichopoda
Anolis carolinensis
Apis mellifera
Arabidopsis lyrata
Arabidopsis thaliana
Bombyx mori
Bos taurus
Brachypodium distachyon
Branchiostoma belcheri
Branchiostoma floridae
Brugia malayi
Caenorhabditis brenneri
Caenorhabditis briggsae
Caenorhabditis elegans
Caenorhabditis remanei
Canis familiaris
Capitella teleta
Capra hircus
Ciona intestinalis
Cricetulus griseus
Cucumis melo
Cyprinus carpio
Danio rerio
Drosophila melanogaster
Drosophila pseudoobscura
Drosophila simulans
Drosophila virilis
Eptesicus fuscus
Equus caballus
Fugu rubripes
Gallus gallus
Glycine max
Gorilla gorilla
Gossypium raimondii
Haemonchus contortus
Ictalurus punctatus
Linum usitatissimum
Macaca mulatta
Malus domestica
Manihot esculenta
Medicago truncatula
Monodelphis domestica
Mus musculus
Nematostella vectensis
Nicotiana tabacum
Ophiophagus hannah
Ornithorhynchus anatinus
Oryza sativa
Oryzias latipes
Ovis aries
Pan troglodytes
Panagrellus redivivus
Petromyzon marinus
Physcomitrella patens
Plutella xylostella
Pongo pygmaeus
Populus trichocarpa
Pristionchus pacificus
Prunus persica
Rattus norvegicus
Salmo salar
Schistosoma mansoni
Schmidtea mediterranea
Solanum tuberosum
Sorghum bicolor
Strongyloides ratti
Sus scrofa
Taeniopygia guttata
Tetraodon nigroviridis
Tribolium castaneum
Triticum aestivum
Tupaia chinensis
Vitis vinifera
Xenopus tropicalis
Zea mays
Select the species parameters which correspond to where your sequence comes from (default value: All miRBase)
Help
A list of features used for the verification is available here :
List of features used
Example file
Multiple artificial sequence
The artificial sequence was created by the concatenation of human mRNAs and the insertion of 100 human pre-miRNAs.
The mRNA sequences came from the Human genome (build 37.2) of the
NCBI Website
and the pre-miRNAs came from
miRBase database
(release 17).
This multifasta file contains 11 sequences.
Download
Example file
For any questions, comments or suggestions about miRNAFold, please feel free to contact:
fariza.tahi@ibisc.univ-evry.fr